Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4394g00005 ATGGATATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATCCTAGCGGTACATGTTCCATGCAGCAGTTTTCTTACCGTAGTGACGGTTCGATGTGGGCACTGTGCTAATTTACTGTCAGTCAACGTAGGAGCATCTCTCCAAACATTCCCTCCTCAAGAGCTTCAGTTACAGAAACAGCACCTAGGCCTTGAAGAACCAAGCAACAGAGAAGAGGAATCATCTTCAAAATGCAGTAAACTTTCTGCATTTGAGTCTGCAGAGCACCAACAACATAGAATTCCTCCCATTCGTCCCCCTGAGAAGAGACAACGAGTTCCTTCTGCTTATAACAGGTTCATCAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCATTCAGCACAGCCGCCAAAAACTGGGCACATTTTCCTCATATTCACTTTGGATTAAAGCCGGATGGCAACAAGCAAGCAAATTTGGACCCGCAGGAAGAGGGAAGTCAAAAATCTAATGGCCTTTATTGA 546 0.4505 MDMMATERVCYVHCNFCNTILAVHVPCSSFLTVVTVRCGHCANLLSVNVGASLQTFPPQELQLQKQHLGLEEPSNREEESSSKCSKLSAFESAEHQQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKPDGNKQANLDPQEEGSQKSNGLY 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4394g00005 181 CDD HMG-box_SF 111 147 - -
Pral4394g00005 181 Pfam YABBY protein 5 157 IPR006780 GO:0007275
Pral4394g00005 181 PANTHER PROTEIN YABBY 6-RELATED 5 166 IPR006780 GO:0007275
Pral4394g00005 181 MobiDBLite consensus disorder prediction 68 112 - -
Pral4394g00005 181 SUPERFAMILY HMG-box 101 150 IPR036910 -
Pral4394g00005 181 MobiDBLite consensus disorder prediction 167 181 - -
Pral4394g00005 181 FunFam Axial regulator YABBY 102 172 - -
Pral4394g00005 181 Gene3D High mobility group box domain 92 153 IPR036910 -
Pral4394g00005 181 MobiDBLite consensus disorder prediction 155 181 - -
Pral4394g00005 181 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4394g00005 Pral-Chr4394 26292 32696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4394g00005 4 181 C2C2-YABBY Transcription Factor Family AT1G08465 63.736 2.37e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pral4394g00005 YABBY 4.1e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4394g00005 K25796 - zju:107410267 282.337