Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4394g00004 ATGGATATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATCCTAGCGGTACATGTTCCATGCAGCAGTTTTCTTACCGTAGTGACGGTTCGATGTGGGCACTGTGCTAATTTACTGTCAGTCAACGTAGGAGCATCTCTCCAAACATTCCCTCCTCAAGAGCTTCAGAAACAGCACCTAGGCCTTGAAGAACCAAGCAACAGAGAAGAGGAATCATCTTCAAAATGCAGTAAACTTTCTGCATTTGAGTCTGCAGAGCACCAACAACATAGAATTCCTCCCATTCGTCCCCCTGAGAAGAGACAACGAGTTCCTTCTGCTTATAACAGGTTCATCAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCATTCAGCACAGCCGCCAAAAACTGGGCACATTTTCCTCATATTCACTTTGGATTAAAGCCGGATGGCAACAAGCAAGCAAATTTGGACCCGCAGGAAGAGGGAAGTCAAAAATCTAATGGCCTTTATTGA 540 0.4519 MDMMATERVCYVHCNFCNTILAVHVPCSSFLTVVTVRCGHCANLLSVNVGASLQTFPPQELQKQHLGLEEPSNREEESSSKCSKLSAFESAEHQQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKPDGNKQANLDPQEEGSQKSNGLY 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4394g00004 179 CDD HMG-box_SF 109 145 - -
Pral4394g00004 179 MobiDBLite consensus disorder prediction 67 82 - -
Pral4394g00004 179 PANTHER PROTEIN YABBY 6-RELATED 5 164 IPR006780 GO:0007275
Pral4394g00004 179 FunFam Axial regulator YABBY 100 170 - -
Pral4394g00004 179 MobiDBLite consensus disorder prediction 65 110 - -
Pral4394g00004 179 MobiDBLite consensus disorder prediction 165 179 - -
Pral4394g00004 179 SUPERFAMILY HMG-box 99 148 IPR036910 -
Pral4394g00004 179 MobiDBLite consensus disorder prediction 153 179 - -
Pral4394g00004 179 Pfam YABBY protein 5 155 IPR006780 GO:0007275
Pral4394g00004 179 Gene3D High mobility group box domain 90 151 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4394g00004 Pral-Chr4394 26286 32696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4394g00004 4 179 C2C2-YABBY Transcription Factor Family AT1G08465 63.333 1.24e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pral4394g00004 YABBY 1.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4394g00004 K25796 - gmx:100500091 284.263