Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4391g00004 ATGGATGGATGGAAGAAGTACTTCCCTCCTACATATGCCCTTTCAGTTGCCACTACCTGCGTCACTCTCTCTCTTTTTCTCATTCTCTTACCTTCCAAGTTAAATCTGATCATTTGTGTGATTTGCTTTACAAGCTTCTTCGGCTTCTACATTATCTCATGGCTTCACCGTTCTGGCGAAGACATGCAAAAGAAGCCTTCATTTTTTAAGGTCTTGATTGAGGATTTCACCACTCGCTTGAAAATCCCACCAGCTTTTATTAAAGAATTTGAAGAAGTGCCAACGAAAACAATACTTGAGACTTATTATGGTAAATCTGAGGAAGTCGAAGTGAAAAAGTTTGGGAGTAAATTTTATTTTCACAATGGATGGAAAAGGTTTGTGGAAGTCAATAATTTGGAAACTGGTGATTTCTTGGTGTTGGAATATTTTGAAGATTATTGCAAGTTTAAGGTCAAAATCTACGGCAAAAGTGATCTGCATCTTCTCGCCAAAGCTTCCATGGATAGAGCTTCACAATCACAAAGAAAACGCAAGAACTCTTCCTTCTTCAAGATTCTGATCCAAGATTTCTCTACCCGCCTGCAAATCCCTCCAGCCTTTAACAAGGTATTTGGTAAAGAGGTGCCAAAGAAAGCAATTCTTGAGACTTATGGTAAATCGGAAGAAGTGGAAGTGGAAAAGCATGATAATCGATTTTGTTTCTGCAATGGATGGAGTAAATTTGTCGAGGACAATAAATTAGAGAATGGAGATTTTTTAGTGTTTAAATATGTGTCGGATTGTTCAACGTTCAAGGTCAGAATCTATGGCAAAACTTGCTGCGAGAAGGAATGTTATAATTCTGCAGATTTTGCTGGAAAGAGATGTTCATCACAACCTGAGAAAAACGAAGATGAGAGGAATAATAATGTTGGAGATGGCCAAAAAAGAAAGAGGGAAGAAGATGGAGCATTGAAAGCTGCAAAAAGGATTGAACCAGACTTTGATTCTGATATTGGAGACGAAGTTTCTGAAGATGAAGCAATTAATATTGATTCTGATGCTTCTCAGCATCCTATCGTCGAAGAAGAAGTTGGTAATTCGAAGCAGCCAACGAGTGAAGAAGCCATAAGATTGCACACTGAGAACCAAACAGAATCTGAGAGTTCTTCCTTCCAAGTCAAACTCAGATCTTCAAGCATCAATAGCTATCTGAATATACCATTAAGGTTTTCGAGGAAATATATAACAAAGGAAAACGAAAGCCAGGAGATTAGAATAGAGATGACCAACAAAGTATGGGAAGTGGGTGTTCTAGTGTTTTGGGCAGCTGGTAAGAAGGAGGTACTCACCGGAGCAAGGCTGACTCAAGGATGGAGGAACCTGGTCTCAGAATGTCATCTCCAAATGGGAGATGTCTGCAATTTTGAATTGATCCAACCAACAGCTCATCATCAGCAACTTGTCTTTCGTCTTCGTGTTCTTAGATGGGATCCTCAAAACGACAAGTTTACTCAGATACTTTAG 1509 0.3917 MDGWKKYFPPTYALSVATTCVTLSLFLILLPSKLNLIICVICFTSFFGFYIISWLHRSGEDMQKKPSFFKVLIEDFTTRLKIPPAFIKEFEEVPTKTILETYYGKSEEVEVKKFGSKFYFHNGWKRFVEVNNLETGDFLVLEYFEDYCKFKVKIYGKSDLHLLAKASMDRASQSQRKRKNSSFFKILIQDFSTRLQIPPAFNKVFGKEVPKKAILETYGKSEEVEVEKHDNRFCFCNGWSKFVEDNKLENGDFLVFKYVSDCSTFKVRIYGKTCCEKECYNSADFAGKRCSSQPEKNEDERNNNVGDGQKRKREEDGALKAAKRIEPDFDSDIGDEVSEDEAINIDSDASQHPIVEEEVGNSKQPTSEEAIRLHTENQTESESSSFQVKLRSSSINSYLNIPLRFSRKYITKENESQEIRIEMTNKVWEVGVLVFWAAGKKEVLTGARLTQGWRNLVSECHLQMGDVCNFELIQPTAHHQQLVFRLRVLRWDPQNDKFTQIL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4391g00004 502 SUPERFAMILY DNA-binding pseudobarrel domain 64 158 IPR015300 -
Pral4391g00004 502 CDD B3_DNA 385 485 IPR003340 GO:0003677
Pral4391g00004 502 SUPERFAMILY DNA-binding pseudobarrel domain 380 477 IPR015300 -
Pral4391g00004 502 CDD B3_DNA 66 155 IPR003340 GO:0003677
Pral4391g00004 502 Gene3D - 60 159 IPR015300 -
Pral4391g00004 502 Gene3D - 174 275 IPR015300 -
Pral4391g00004 502 SMART B3_2 68 158 IPR003340 GO:0003677
Pral4391g00004 502 SMART B3_2 386 490 IPR003340 GO:0003677
Pral4391g00004 502 SMART B3_2 183 273 IPR003340 GO:0003677
Pral4391g00004 502 SUPERFAMILY DNA-binding pseudobarrel domain 177 275 IPR015300 -
Pral4391g00004 502 MobiDBLite consensus disorder prediction 290 334 - -
Pral4391g00004 502 Gene3D - 365 492 IPR015300 -
Pral4391g00004 502 MobiDBLite consensus disorder prediction 291 331 - -
Pral4391g00004 502 Pfam B3 DNA binding domain 68 156 IPR003340 GO:0003677
Pral4391g00004 502 Pfam B3 DNA binding domain 389 475 IPR003340 GO:0003677
Pral4391g00004 502 Pfam B3 DNA binding domain 183 270 IPR003340 GO:0003677
Pral4391g00004 502 CDD B3_DNA 182 270 IPR003340 GO:0003677
Pral4391g00004 502 ProSiteProfiles B3 DNA-binding domain profile. 384 492 IPR003340 GO:0003677
Pral4391g00004 502 ProSiteProfiles B3 DNA-binding domain profile. 180 273 IPR003340 GO:0003677
Pral4391g00004 502 PANTHER B3 DOMAIN-CONTAINING 63 158 - -
Pral4391g00004 502 ProSiteProfiles B3 DNA-binding domain profile. 65 158 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4391g00004 Pral-Chr4391 75272 81387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4391g00004 179 318 B3 DNA Binding Superfamily AT5G66980 35.948 3.76e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4391g00004 B3 6.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4391g00004 - - pcin:129289042 386.341