Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4377g00015 ATGGTGAGAGCACCTTGCTGCGAGAAGGTGGGATTGAAGAAAGGAAGATGGACGGCTGAAGAGGATCAGATATTGACACAGTACATCCAACAACATGGTGAAGGATCCTGGAGGAACTTGCCCAAGAATGCCGGATTGCTGAGGTGTGGGAAGAGTTGCAGACTGAGATGGATAAACTACTTGAGGGCAGACGTGAAGAGAGGAAACATCACTCCTGAGGAAGAAGAAATCATCGTCAAGCTGCATGCTGCTCTCGGAAACAGGTGGTCTGTGATAGCAGGACATTTACCAGGACGAACAGATAATGAGATAAAGAATTATTGGAACTCTCATTTAAGGAGAAAAATCTACTGCTTTATCAAAACCCTGAACCAATCCCTGCCCTCCACCCACTTGCCGTCTATAAACGATATTGCTGCTTCCTCCAAACGAAGAGGAGGACGGGTCAGGCCCACTCAACCCACCATCAAGCCCAACAACCCGACTCCTTCGGCCCAAAATTCCCACTCACACAGTAGCGCATGCAAGGTATTTGAAAAAATTGATGATAATCTCGAGACCATGGGACCATATCAGTGGCTAGACGATGAGATAAAGAAGCTCAGTTTTATGTTAGAAAATGGGGTGTTTATGAACCCAAGGGAGAATTATGCGGAACCAGAAAATGAATTAGTGCTAAGCAGAAATAATGACATGGTGGGTGGAGATTTGTATGAACTCGTGGGAAAGCAAATAATGGGAGCAAGTGATGAGGATGTTATGAGCAGAAACAGTAACGCTAATTCGTCAGAGATTTCTGTCTATGATTATCAGTGGCTTGATTGGGATTACAATCAACGAGATTTTTGTGAAGAGAACCTGAATGCGAATTGTTTGTGGGGTGATGGCACTGGTGGAGAATTTGGGGGGCGTTTGTGTTCATATAATTAA 930 0.4462 MVRAPCCEKVGLKKGRWTAEEDQILTQYIQQHGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFIKTLNQSLPSTHLPSINDIAASSKRRGGRVRPTQPTIKPNNPTPSAQNSHSHSSACKVFEKIDDNLETMGPYQWLDDEIKKLSFMLENGVFMNPRENYAEPENELVLSRNNDMVGGDLYELVGKQIMGASDEDVMSRNSNANSSEISVYDYQWLDWDYNQRDFCEENLNANCLWGDGTGGEFGGRLCSYN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4377g00015 309 CDD SANT 16 61 IPR001005 -
Pral4377g00015 309 Gene3D - 71 116 - -
Pral4377g00015 309 SMART sant 66 114 IPR001005 -
Pral4377g00015 309 SMART sant 13 63 IPR001005 -
Pral4377g00015 309 MobiDBLite consensus disorder prediction 153 172 - -
Pral4377g00015 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral4377g00015 309 FunFam Myb transcription factor 11 67 - -
Pral4377g00015 309 MobiDBLite consensus disorder prediction 142 172 - -
Pral4377g00015 309 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral4377g00015 309 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 169 - -
Pral4377g00015 309 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4377g00015 309 CDD SANT 71 112 IPR001005 -
Pral4377g00015 309 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral4377g00015 309 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4377g00015 309 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral4377g00015 309 Gene3D - 13 66 - -
Pral4377g00015 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral4377g00015 309 FunFam Myb transcription factor 71 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4377g00015 Pral-Chr4377 102051 104611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4377g00015 1 201 MYB Transcription Factor Family AT5G49330 54.338 1.53e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4377g00015 Myb_DNA-binding 6.8e-14 CL0123