Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4377g00013 ATGGTTGATCCGAGTGGAAAAGGAACAGAGGTAGAGGACACCAATAACAGAAACCCTAACGGTGATTCCTCGGAAGAAAGCCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCGACTGCGGCACGACAAAAACCCCTCTCTGGAGAGGCGGTCCGGCGGGGCCTAAGTCTCTCTGCAACGCATGTGGAATCAGAAGCAGGAAGAAGAAGAGAGCTATTCTAGGCACGAACAAGGGAAGCACAGAAGAGAAAAAGGGCAAAAGAAGCAGCAACAATGCTAAGATTGGGGATAGTTTAAAGCAGAGATTAATGGCTCTGGGAAGGGAGGTTTTGATGCAGAGGTCACCGGTGGAGAGGCAGAGGAAGAAGCTGGGAGAGGAAGAACAAGCCGCTGTACTGTTGATGGCTCTCTCATGTGGCTCGGTCTATGCTTAA 435 0.508 MVDPSGKGTEVEDTNNRNPNGDSSEESPMSNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGTNKGSTEEKKGKRSSNNAKIGDSLKQRLMALGREVLMQRSPVERQRKKLGEEEQAAVLLMALSCGSVYA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4377g00013 144 CDD ZnF_GATA 36 71 IPR000679 GO:0006355|GO:0043565
Pral4377g00013 144 MobiDBLite consensus disorder prediction 75 91 - -
Pral4377g00013 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 72 - -
Pral4377g00013 144 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Pral4377g00013 144 SMART GATA_3 31 82 IPR000679 GO:0006355|GO:0043565
Pral4377g00013 144 ProSitePatterns GATA-type zinc finger domain. 37 62 IPR000679 GO:0006355|GO:0043565
Pral4377g00013 144 MobiDBLite consensus disorder prediction 9 40 - -
Pral4377g00013 144 MobiDBLite consensus disorder prediction 1 55 - -
Pral4377g00013 144 MobiDBLite consensus disorder prediction 70 96 - -
Pral4377g00013 144 Gene3D - 31 95 IPR013088 GO:0006355|GO:0008270
Pral4377g00013 144 PANTHER OS01G0976800 PROTEIN 9 144 - -
Pral4377g00013 144 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4377g00013 Pral-Chr4377 74548 75722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4377g00013 1 144 C2C2-Gata Transcription Factor Family AT3G06740 59.477 2.25e-52 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral4377g00013 GATA 6.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4377g00013 - - qsa:O6P43_021814 229.565