Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4377g00009 ATGTTGGCGGCGTCTATTGTTGCAGAGGAAGATGGATTATTAGCTGGCAAAGCACCGCCTGGTATAGTTAATCCCTCTGACGGGGAAGGTGATACAGATCCAGAAATAATATTGACGGCATTAGGTACTGAAGTTGATCTATCTGTGTTAGCTGCTTTGCCGCAGTCGATGCAACTTGATATTCTCTCTCAGATTAAAGGGAAAAAAATAGAAGGCCTACCTAAGGATTCTGACAACCAGAAACAATTTGAGGTCAATGAAAAGGGCAGGGGCAAGGGGATTCTGTTGCATGAAATTGACACAGCTGGAGGTAGCTCAAGCAGTGATGATATGGTGGCAAAGAAATGCAATCAGGACAAAGTGGATGAGATGTTGGCTGCATCTATTTTGGCTGAGGAAAATGAAAAGTTTGTAAACAATGCATCAACGTCTGCTGGAGCTTTCATCTCCGAGGAAGAGGATTACGTTAATGATGAAGATGAAGAAATGATCTTGCCAGCGATGCATGGTAAGGTTGATCCAGCTGTTCTAGCCTCTTTGCCTCCATCAATGCAACTTGACCTCCTTGGTCAGATGAGAGAGCGACTGATCGCAGATAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAATTGCAAATACAGGCTTACCTTAAAACTGTTGCTTTCCGTCGGGAGATAAATGAAGTGCAGAAAGTAGCTGCAGGGGGAGTGGTAGATGGTGTACGAACTTCTCGTATTGCATCTGAAGCCAACAGAGAGTATATATTTTCAAGATCTTTTACCGGTGATAAACAAGGACTTACTTCTACTGGCTTGGAGAAAAATAAAGACTCTCATAAAAAGACTCAAGGGAACCATTTTTCTCAGGGTTTTGTGAATAGTAGTGATCCTGCCAACGAATCTAGTACCTCAAGTGGGTTAGTTTGCAGTGAAGCTGGAAGCCCATCTGATGAGAACATCCAAACTTATCTGGATGATAGGGGCCAATTTCGTGTTAGTAGACTTAGAGCTATGGGGATGCGTATGACTCGTGACATACAAAGGAATTTGGATCTGATGAAGGAGATTGAGCTGGAAAGAACAGTTTCAAATAAGGCAGCAAATAATAATGCAATTCTTAGTGGGGAGAAAAATGTTGCATCAAAAAGATCTGTTGGTACGTCTGACAGATCACATGTTGACTTAGTTGGAGATAATTCTAGAAATGAACACCCTGCATTAGCAGGGGATGCTCCTTTAGAGATATCCTTCATGGATGATGGTGATAACAAGTGCCTTAATGATGATGAAGATGATTTATTTGCTAGTTTAGTAGCAGGTAGTAATTCAGTAGTATTTTCTTGTGCTGACAATAACTCATTGAAAGGACAAGTTTCTGATTCTAGTTCTGATTGTGACTGGGAGGAAGGAACCGTTGAAGGTAAAAATGATGTTAATGTGGAAATAAAACCATCTGTTGCTAAAGATAGTTATGATGATGAGTCTGATGTAGAATGGGAGGATGGAGTTTGTGATGATGCTAACACGTGTGCTGCTAAGGAGCAGAAAAAAACATCTCGAGGTCACTTGGAGGAGGAGGCTGATTTACAGGAGGCCATACGGAGAAGTCTAGAGGTCATGGGGGACCACAAACTTAATTGCACATCATCCAGTCATAAGCATTCAAATGCAGACGAGGACAAATCAGATTATGTATCAAACCAAGATGATAATTTGGTTGGCCCTGGAGCGAAGGGTATTTGTGACAATTTTGGAGTACTGAATAAAGACATTGGAATGGGTGAGTCCACTTTGCAAAGGGAAGGTAACACTGGACACAGTGAATCAAATTATAAAACTATAAATGATAAGATGGATAGCACAACGAGAAGTGACAAACATGTTTCCCAGTCTCCTGAGAGACAGTCAAAGTCATCTATGGCGGTTGATTCCAAGAAGACAGTGTCATATATTAGGAAGCCTCATTCGACGGAGATAGGATCACATGCTGAAGATTTGTTGTACACTGCAAATGACAGCACGAGGAATGAGATTCATATGGCTGCAGAGCAACTCACAGGTACCTTAAATGAAGATGGCGAGGTGTCTACCAATGGTAACAGATCTCTTGTAGCTGACTCCCTTGGTGCTTCGGAAGAGGAGAAAAAGAACTGCAGTCATGTAGCTGAACCTTTTGGTAATTACTCTGAGATGCCTGAGCCTGTTGCTCCTTTTGTGGGTTCCTCCTTGGAAGGATTAACAGAAGACCTTGACACTCAGTCAGAGTTACCTAGAGAGGAGAATTGTGGAAGCTTTGAGAAAAGGAGGAGTAACCTTGGTAAAGATGCAATAGAGCCCCCAGGTTTTTTGTCTGCCAAAGACCTTGAAACTCAGTCAGAGTTGCCTAGAGAGGATAAACATGGAAGCTTTGAGGAAAACAAGAATAACCTTGTTGAAGATGCAATGAAAGCCCCAGGTCATTTGTCTGCAGATGCAGTTGAGCGTGGTTTGGAGGAAGAAATCCGAGTTCTTGGTCAAGAATATGCCAACCTAGAATATGAGCAGAGGAAGCTTGAACGCAATGCAGAATCTGTTAACAATGAGTTATTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCATACATTATCGCTCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCAAAACTGGTGGATGGTGTTGTGACTGATGACTCTGATGTCTTTTTATTTGGGGCACGGAGTGTCTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACGTTGAGAAGGAGCTTGGATTGACGAGAGAAAAATTAATCCGCATGGCTTTGCTTCTAGGGAGTGATTATACTGAAGGTGTAAGTGGAATTGGAATTGTAAATGCTATTGAGGTTGTAAATGCATTCCCGGAGGAAGATGGCCTTCTGAAATTCCGGCAGTGGGTTGAGTCACCGGACCCTACAATCTTTGGAAGGAATGAAACAAAAAGCAGATCCAGCACCCGAAAGAAAGGGTCAAAAGTTGAAGAAAACGTTATTGGCACAAATTGCAATAAAGAGACTATGGTGGATCAAAACGTTTCCCTTGCTCAGGAACATGATTCATCGGATGAAGTGCAAGAAATCAAGCAGATTTTTATGAGCAAACATAGAAATGTGAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCCTACTCCTGTCCACAAGTGGACAAGTCAACTGATCCATTTTCCTGGGGAAAGCCGGATCATCTTGTTCTTCGCAAATTATGCTGGGAGAAGTTTGGCTGGACTAGTCAGAAAGCAGATGAGTTGCTTTTACCAGTTTTAAAGGAATATAACAAAAATGAGACTCAACTGCGGTTGGAAGCATTTTATACTTTCAATGAAAGATTTGCAAAAATTCGCAGTAAGAGGATTAAGAAAGCTGTGAAAGGAATCACTGGCAATCACTATTCAGAGTTTACAAATGAGTCTGGAGAGGACTTGTCTAAGAGTAGGAAGAATGAGACAGGAATTCCTGCTGAACTTGGGATTAGCAAATCAGAAACTTTTAAGGGAACGAGAGAAAGCCCTGCTGACAAGAAGCCAGTAAATTTAAAACAGTCAAGGAAAAGGAAGAATTTTGGAGATACTGTTGCCAAGACACAGTCAAGGAAAAAGGGTAAATTAAATGCTCCTGCCTCACCTTCTGGTCTGCCTGAGGTAGTTGTGCAGACAGGTGAAGAGCCTGAAAAAGGTAGAAGTAGAAGCAGCAAAGGCAGAGAAAAAGGTGGAAGGGTTCCAAGAGGAAGGAGGAAGAGAAGTCTTGGTATTGATTCACGTAAAATTACATCTAGTGACAGTGACAGTGATGACCATGAGCCTGAAGTGCATGGTAAAAACTCAAGAGGGACAGAAGAGATCCGAAGGTCTATGCGTCCTCGGAAGATTATTAACTATTCCACAGACAACATTGAAGTTGAAGATCCTGTTATCTCATCTGATCAGAGCAATAAGACAGACTTGAATGGAGAGAAAATAGATGAAATATTTTCTGGGCTGCATAGCACATCTGATCAGAGCAATAAGACAGACTTGAATGGAGAGAAAATAGATGAAATATTTTCTGGGCTGCATGGTGTTTGTGCCAATGCTGACTCTGGTTTCAGCAGACATAAGGAAAGCACAATAAATTTTTCCCCGAAGAAGGATTTGTCTAGAAGCTATCTGGAATCTGGAGGGGGTTTCTGTACTGATGAAGAAAAAGCTAGTCATGCAGGAACGAGCAATTGTGATAGCTCTCGTGATGCAGACTACCTTAAAGTGGGAGGTGGATTTTGCCTGGATGAGGATGAGACAGGTGGCAAGCATAATGAAATTCGTGACGGCGCCTACCTTAGAGTGGGAGGTGGATTTTGCCTAGATGAGGATGAGACAGGTAGCAAACATGATGAAATTCATGACGATGCAGCAACTATAGTAGAGGATAGTGCAGACCTTACTCCTGGTTGTTCTGGTTTTGCAGATGAGGCTGAATGTGGTAAAAATACTGCTTATCAATCAAGTTCGGTTAAGAAAATATCTGGAATGGAGCTTCAAGATAGAGAGAACACTAAACACAAGAGTGAGATGAATGATGACTCTGTGAATACTAGAGGTAATTATGATCGGTCTGAGTCTGACACTGGGGTTTGGATATCAGAGAATGCTCATGGCGATACTGAGAATGCTGCAGCAGCATTTAGTGCGATGCCTTTTCTAAGAAAGAAAAAGAGGAAGAGCTGA 4824 0.4181 MLAASIVAEEDGLLAGKAPPGIVNPSDGEGDTDPEIILTALGTEVDLSVLAALPQSMQLDILSQIKGKKIEGLPKDSDNQKQFEVNEKGRGKGILLHEIDTAGGSSSSDDMVAKKCNQDKVDEMLAASILAEENEKFVNNASTSAGAFISEEEDYVNDEDEEMILPAMHGKVDPAVLASLPPSMQLDLLGQMRERLIADNRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKVAAGGVVDGVRTSRIASEANREYIFSRSFTGDKQGLTSTGLEKNKDSHKKTQGNHFSQGFVNSSDPANESSTSSGLVCSEAGSPSDENIQTYLDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEIELERTVSNKAANNNAILSGEKNVASKRSVGTSDRSHVDLVGDNSRNEHPALAGDAPLEISFMDDGDNKCLNDDEDDLFASLVAGSNSVVFSCADNNSLKGQVSDSSSDCDWEEGTVEGKNDVNVEIKPSVAKDSYDDESDVEWEDGVCDDANTCAAKEQKKTSRGHLEEEADLQEAIRRSLEVMGDHKLNCTSSSHKHSNADEDKSDYVSNQDDNLVGPGAKGICDNFGVLNKDIGMGESTLQREGNTGHSESNYKTINDKMDSTTRSDKHVSQSPERQSKSSMAVDSKKTVSYIRKPHSTEIGSHAEDLLYTANDSTRNEIHMAAEQLTGTLNEDGEVSTNGNRSLVADSLGASEEEKKNCSHVAEPFGNYSEMPEPVAPFVGSSLEGLTEDLDTQSELPREENCGSFEKRRSNLGKDAIEPPGFLSAKDLETQSELPREDKHGSFEENKNNLVEDAMKAPGHLSADAVERGLEEEIRVLGQEYANLEYEQRKLERNAESVNNELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDVEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGRNETKSRSSTRKKGSKVEENVIGTNCNKETMVDQNVSLAQEHDSSDEVQEIKQIFMSKHRNVSKNWHIPSSFPSETVISAYSCPQVDKSTDPFSWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNHYSEFTNESGEDLSKSRKNETGIPAELGISKSETFKGTRESPADKKPVNLKQSRKRKNFGDTVAKTQSRKKGKLNAPASPSGLPEVVVQTGEEPEKGRSRSSKGREKGGRVPRGRRKRSLGIDSRKITSSDSDSDDHEPEVHGKNSRGTEEIRRSMRPRKIINYSTDNIEVEDPVISSDQSNKTDLNGEKIDEIFSGLHSTSDQSNKTDLNGEKIDEIFSGLHGVCANADSGFSRHKESTINFSPKKDLSRSYLESGGGFCTDEEKASHAGTSNCDSSRDADYLKVGGGFCLDEDETGGKHNEIRDGAYLRVGGGFCLDEDETGSKHDEIHDDAATIVEDSADLTPGCSGFADEAECGKNTAYQSSSVKKISGMELQDRENTKHKSEMNDDSVNTRGNYDRSESDTGVWISENAHGDTENAAAAFSAMPFLRKKKRKS 1607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4377g00009 1607 ProSitePatterns XPG protein signature 2. 880 894 IPR019974 GO:0016788
Pral4377g00009 1607 SMART xpgineu 877 946 IPR006086 GO:0004518
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 1547 1567 - -
Pral4377g00009 1607 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 75 1383 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 624 638 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 757 780 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 602 652 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 1170 1330 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 551 572 - -
Pral4377g00009 1607 Pfam XPG I-region 880 961 IPR006086 GO:0004518
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 551 582 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 388 411 - -
Pral4377g00009 1607 CDD PIN_XPG_RAD2 863 947 - -
Pral4377g00009 1607 Gene3D - 803 945 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 756 809 - -
Pral4377g00009 1607 Coils Coil 833 867 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 1206 1237 - -
Pral4377g00009 1607 FunFam DNA repair protein UVH3 946 1003 - -
Pral4377g00009 1607 SMART HhH_4 948 981 IPR008918 GO:0003677|GO:0003824
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 603 623 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 272 331 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 1285 1329 - -
Pral4377g00009 1607 CDD H3TH_XPG 949 1091 - -
Pral4377g00009 1607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 897 917 IPR006084 -
Pral4377g00009 1607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 876 893 IPR006084 -
Pral4377g00009 1607 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 951 966 IPR006084 -
Pral4377g00009 1607 SUPERFAMILY PIN domain-like 849 961 IPR029060 -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 1260 1277 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 290 329 - -
Pral4377g00009 1607 FunFam DNA repair protein UVH3 826 945 - -
Pral4377g00009 1607 Gene3D - 946 1060 - -
Pral4377g00009 1607 MobiDBLite consensus disorder prediction 1547 1573 - -
Pral4377g00009 1607 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 946 1153 IPR036279 -
Pral4377g00009 1607 Pfam Ubiquitin binding region 43 64 IPR025527 -
Pral4377g00009 1607 Pfam Ubiquitin binding region 172 196 IPR025527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4377g00009 Pral-Chr4377 21844 32721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4377g00009 871 978 Core DNA Replication Machinery Family AT5G26680 35.135 3.22e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4377g00009 K10846 - gmx:100820295 1426.77