Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4377g00008 ATGGGAGTGAAGGGTCTCTGGGAGCTTTTTGCCCCCGTTGGTCGTCGGGTCTCCGTTGAGACCCTTGCCGGGAAGAAGCTCGCCATTGATGCAAGCATATGGATGGTTCAGTTTATGAAGGCAATGCGCGATGAGAAGGGAGAAGTAGTTCACAATGCTCATTTGCTCGGCTTCTTTCGCCGGATTTGCAAGCTCTTGTTTCTGCGGACTAAGCCTGTTTTTGTCTTCGATGGCGGCACGCCTGTTCTCAAGCGACGTACTGTGATTGCGCGTCGGAGGCAGCGGGAAAATGCTCAGGCCAAAGTTCGAAAGACTGCAGAGAAATTGCTTCTCAATCATTTAAAGGCACTGAAGTTGAAAAAACTTTCAGATGATGTTAAAAACCAGAGGCTGGAGCAGAACAGTGGTGCTAAGGGTCAGAAAAAATCTGATCGGACAGACTTAATTGGCTGCGATTTAGGAAGAAACAATGAAAAAGAACAAGATAAAATATGTGAAGCTGAGGCGGACAAGAATATATCAAAGACTGCTGTATCAAGAAGTCGCAATCAGGAGGATCTTGATGCAATGTTGGCGGCGTCTATTGTTGCAGAGGAAGATGGATTATTAGCTGGCAAAGCACCGCCTGGTATAGTTAATCCCTCTGACGGGGAAGGTGATACAGATCCAGAAATAATATTGACGGCATTAGGTACTGAAGTTGATCTATCTGTGTTAGCTGCTTTGCCGCAGTCGATGCAACTTGATATTCTCTCTCAGATTAAAGGGAAAAAAATAGAAGGCCTACCTAAGGATTCTGACAACCAGAAACAATTTGAGGTCAATGAAAAGGGCAGGGGCAAGGGGATTCTGTTGCATGAAATTGACACAGCTGGAGGTAGCTCAAGCAGTGATGATATGGTGGCAAAGAAATGCAATCAGGACAAAGTGGATGAGATGTTGGCTGCATCTATTTTGGCTGAGGAAAATGAAAAGTTTGTAAACAATGCATCAACGTCTGCTGGAGCTTTCATCTCCGAGGAAGAGGATTACGTTAATGATGAAGATGAAGAAATGATCTTGCCAGCGATGCATGGTAAGGTTGATCCAGCTGTTCTAGCCTCTTTGCCTCCATCAATGCAACTTGACCTCCTTGGTCAGATGAGAGAGCGACTGATCGCAGATAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAATTGCAAATACAGGCTTACCTTAAAACTGTTGCTTTCCGTCGGGAGATAAATGAAGTGCAGAAAGTAGCTGCAGGGGGAGTGGTAGATGGTGTACGAACTTCTCGTATTGCATCTGAAGCCAACAGAGAGTATATATTTTCAAGATCTTTTACCGGTGATAAACAAGGACTTACTTCTACTGGCTTGGAGAAAAATAAAGACTCTCATAAAAAGACTCAAGGGAACCATTTTTCTCAGGGTTTTGTGAATAGTAGTGATCCTGCCAACGAATCTAGTACCTCAAGTGGGTTAGTTTGCAGTGAAGCTGGAAGCCCATCTGATGAGAACATCCAAACTTATCTGGATGATAGGGGCCAATTTCGTGTTAGTAGACTTAGAGCTATGGGGATGCGTATGACTCGTGACATACAAAGGAATTTGGATCTGATGAAGGAGATTGAGCTGGAAAGAACAGTTTCAAATAAGGCAGCAAATAATAATGCAATTCTTAGTGGGGAGAAAAATGTTGCATCAAAAAGATCTGTTGGTACGTCTGACAGATCACATGTTGACTTAGTTGGAGATAATTCTAGAAATGAACACCCTGCATTAGCAGGGGATGCTCCTTTAGAGATATCCTTCATGGATGATGGTGATAACAAGTGCCTTAATGATGATGAAGATGATTTATTTGCTAGTTTAGTAGCAGGTAGTAATTCAGTAGTATTTTCTTGTGCTGACAATAACTCATTGAAAGGACAAGTTTCTGATTCTAGTTCTGATTGTGACTGGGAGGAAGGAACCGTTGAAGGTAAAAATGATGTTAATGTGGAAATAAAACCATCTGTTGCTAAAGATAGTTATGATGATGAGTCTGATGTAGAATGGGAGGATGGAGTTTGTGATGATGCTAACACGTGTGCTGCTAAGGAGCAGAAAAAAACATCTCGAGGTCACTTGGAGGAGGAGGCTGATTTACAGGAGGCCATACGGAGAAGTCTAGAGGTCATGGGGGACCACAAACTTAATTGCACATCATCCAGTCATAAGCATTCAAATGCAGACGAGGACAAATCAGATTATGTATCAAACCAAGATGATAATTTGGTTGGCCCTGGAGCGAAGGGTATTTGTGACAATTTTGGAGTACTGAATAAAGACATTGGAATGGGTGAGTCCACTTTGCAAAGGGAAGGTAACACTGGACACAGTGAATCAAATTATAAAACTATAAATGATAAGATGGATAGCACAACGAGAAGTGACAAACATGTTTCCCAGTCTCCTGAGAGACAGTCAAAGTCATCTATGGCGGTTGATTCCAAGAAGACAGTGTCATATATTAGGAAGCCTCATTCGACGGAGATAGGATCACATGCTGAAGATTTGTTGTACACTGCAAATGACAGCACGAGGAATGAGATTCATATGGCTGCAGAGCAACTCACAGGTACCTTAAATGAAGATGGCGAGGTGTCTACCAATGGTAACAGATCTCTTGTAGCTGACTCCCTTGGTGCTTCGGAAGAGGAGAAAAAGAACTGCAGTCATGTAGCTGAACCTTTTGGTAATTACTCTGAGATGCCTGAGCCTGTTGCTCCTTTTGTGGGTTCCTCCTTGGAAGGATTAACAGAAGACCTTGACACTCAGTCAGAGTTACCTAGAGAGGAGAATTGTGGAAGCTTTGAGAAAAGGAGGAGTAACCTTGGTAAAGATGCAATAGAGCCCCCAGGTTTTTTGTCTGCCAAAGACCTTGAAACTCAGTCAGAGTTGCCTAGAGAGGATAAACATGGAAGCTTTGAGGAAAACAAGAATAACCTTGTTGAAGATGCAATGAAAGCCCCAGGTCATTTGTCTGCAGATGCAGTTGAGCGTGGTTTGGAGGAAGAAATCCGAGTTCTTGGTCAAGAATATGCCAACCTAGAATATGAGCAGAGGAAGCTTGAACGCAATGCAGAATCTGTTAACAATGAGTTATTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCATACATTATCGCTCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCAAAACTGGTGGATGGTGTTGTGACTGATGACTCTGATGTCTTTTTATTTGGGGCACGGAGTGTCTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACGTTGAGAAGGAGCTTGGATTGACGAGAGAAAAATTAATCCGCATGGCTTTGCTTCTAGGGAGTGATTATACTGAAGGTGTAAGTGGAATTGGAATTGTAAATGCTATTGAGGTTGTAAATGCATTCCCGGAGGAAGATGGCCTTCTGAAATTCCGGCAGTGGGTTGAGTCACCGGACCCTACAATCTTTGGAAGGAATGAAACAAAAAGCAGATCCAGCACCCGAAAGAAAGGGTCAAAAGTTGAAGAAAACGTTATTGGCACAAATTGCAATAAAGAGACTATGGTGGATCAAAACGTTTCCCTTGCTCAGGAACATGATTCATCGGATGAAGTGCAAGAAATCAAGCAGATTTTTATGAGCAAACATAGAAATGTGAGCAAGAATTGGCACATCCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCCTACTCCTGTCCACAAGTGGACAAGTCAACTGATCCATTTTCCTGGGGAAAGCCGGATCATCTTGTTCTTCGCAAATTATGCTGGGAGAAGTTTGGCTGGACTAGTCAGAAAGCAGATGAGTTGCTTTTACCAGTTTTAAAGGAATATAACAAAAATGAGACTCAACTGCGGTTGGAAGCATTTTATACTTTCAATGAAAGATTTGCAAAAATTCGCAGTAAGAGGATTAAGAAAGCTGTGAAAGGAATCACTGGCAATCACTATTCAGAGTTTACAAATGAGTCTGGAGAGGACTTGTCTAAGAGTAGGAAGAATGAGACAGGAATTCCTGCTGAACTTGGGATTAGCAAATCAGAAACTTTTAAGGGAACGAGAGAAAGCCCTGCTGACAAGAAGCCAGTAAATTTAAAACAGTCAAGGAAAAGGAAGAATTTTGGAGATACTGTTGCCAAGACACAGTCAAGGAAAAAGGGTAAATTAAATGCTCCTGCCTCACCTTCTGGTCTGCCTGAGGTAGTTGTGCAGACAGGTGAAGAGCCTGAAAAAGGTAGAAGTAGAAGCAGCAAAGGCAGAGAAAAAGGTGGAAGGGTTCCAAGAGGAAGGAGGAAGAGAAGTCTTGGTATTGATTCACGTAAAATTACATCTAGTGACAGTGACAGTGATGACCATGAGCCTGAAGTGCATGGTAAAAACTCAAGAGGGACAGAAGAGATCCGAAGGTCTATGCGTCCTCGGAAGATTATTAACTATTCCACAGACAACATTGAAGTTGAAGATCCTGTTATCTCATCTGATCAGAGCAATAAGACAGACTTGAATGGAGAGAAAATAGATGAAATATTTTCTGGGCTGCATAGCACATCTGATCAGAGCAATAAGACAGACTTGAATGGAGAGAAAATAGATGAAATATTTTCTGGGCTGCATGGTGTTTGTGCCAATGCTGACTCTGGTTTCAGCAGACATAAGGAAAGCACAATAAATTTTTCCCCGAAGAAGGATTTGTCTAGAAGCTATCTGGAATCTGGAGGGGGTTTCTGTACTGATGAAGAAAAAGCTAGTCATGCAGGAACGAGCAATTGTGATAGCTCTCGTGATGCAGACTACCTTAAAGTGGGAGGTGGATTTTGCCTGGATGAGGATGAGACAGGTGGCAAGCATAATGAAATTCGTGACGGCGCCTACCTTAGAGTGGGAGGTGGATTTTGCCTAGATGAGGATGAGACAGGTAGCAAACATGATGAAATTCATGACGATGCAGCAACTATAGTAGAGGATAGTGCAGACCTTACTCCTGGTTGTTCTGGTTTTGCAGATGAGGCTGAATGTGGTAAAAATACTGCTTATCAATCAAGTTCGGTTAAGAAAATATCTGGAATGGAGCTTCAAGATAGAGAGAACACTAAACACAAGAGTGAGATGAATGATGACTCTGTGAATACTAGAGGTAATTATGATCGGTCTGAGTCTGACACTGGGGTTTGGATATCAGAGAATGCTCATGGCGATACTGAGAATGCTGCAGCAGCATTTAGTGCGATGCCTTTTCTAAGAAAGAAAAAGAGGAAGAGCTGA 5391 0.4233 MGVKGLWELFAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEVVHNAHLLGFFRRICKLLFLRTKPVFVFDGGTPVLKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKALKLKKLSDDVKNQRLEQNSGAKGQKKSDRTDLIGCDLGRNNEKEQDKICEAEADKNISKTAVSRSRNQEDLDAMLAASIVAEEDGLLAGKAPPGIVNPSDGEGDTDPEIILTALGTEVDLSVLAALPQSMQLDILSQIKGKKIEGLPKDSDNQKQFEVNEKGRGKGILLHEIDTAGGSSSSDDMVAKKCNQDKVDEMLAASILAEENEKFVNNASTSAGAFISEEEDYVNDEDEEMILPAMHGKVDPAVLASLPPSMQLDLLGQMRERLIADNRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKVAAGGVVDGVRTSRIASEANREYIFSRSFTGDKQGLTSTGLEKNKDSHKKTQGNHFSQGFVNSSDPANESSTSSGLVCSEAGSPSDENIQTYLDDRGQFRVSRLRAMGMRMTRDIQRNLDLMKEIELERTVSNKAANNNAILSGEKNVASKRSVGTSDRSHVDLVGDNSRNEHPALAGDAPLEISFMDDGDNKCLNDDEDDLFASLVAGSNSVVFSCADNNSLKGQVSDSSSDCDWEEGTVEGKNDVNVEIKPSVAKDSYDDESDVEWEDGVCDDANTCAAKEQKKTSRGHLEEEADLQEAIRRSLEVMGDHKLNCTSSSHKHSNADEDKSDYVSNQDDNLVGPGAKGICDNFGVLNKDIGMGESTLQREGNTGHSESNYKTINDKMDSTTRSDKHVSQSPERQSKSSMAVDSKKTVSYIRKPHSTEIGSHAEDLLYTANDSTRNEIHMAAEQLTGTLNEDGEVSTNGNRSLVADSLGASEEEKKNCSHVAEPFGNYSEMPEPVAPFVGSSLEGLTEDLDTQSELPREENCGSFEKRRSNLGKDAIEPPGFLSAKDLETQSELPREDKHGSFEENKNNLVEDAMKAPGHLSADAVERGLEEEIRVLGQEYANLEYEQRKLERNAESVNNELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDVEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGRNETKSRSSTRKKGSKVEENVIGTNCNKETMVDQNVSLAQEHDSSDEVQEIKQIFMSKHRNVSKNWHIPSSFPSETVISAYSCPQVDKSTDPFSWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNHYSEFTNESGEDLSKSRKNETGIPAELGISKSETFKGTRESPADKKPVNLKQSRKRKNFGDTVAKTQSRKKGKLNAPASPSGLPEVVVQTGEEPEKGRSRSSKGREKGGRVPRGRRKRSLGIDSRKITSSDSDSDDHEPEVHGKNSRGTEEIRRSMRPRKIINYSTDNIEVEDPVISSDQSNKTDLNGEKIDEIFSGLHSTSDQSNKTDLNGEKIDEIFSGLHGVCANADSGFSRHKESTINFSPKKDLSRSYLESGGGFCTDEEKASHAGTSNCDSSRDADYLKVGGGFCLDEDETGGKHNEIRDGAYLRVGGGFCLDEDETGSKHDEIHDDAATIVEDSADLTPGCSGFADEAECGKNTAYQSSSVKKISGMELQDRENTKHKSEMNDDSVNTRGNYDRSESDTGVWISENAHGDTENAAAAFSAMPFLRKKKRKS 1796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 1736 1756 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 813 827 - -
Pral4377g00008 1796 FunFam DNA repair protein UVH3 1015 1134 - -
Pral4377g00008 1796 Coils Coil 1022 1056 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 1395 1426 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 461 520 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 577 600 - -
Pral4377g00008 1796 FunFam DNA repair protein UVH3 1135 1192 - -
Pral4377g00008 1796 CDD PIN_XPG_RAD2 1052 1136 - -
Pral4377g00008 1796 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 255 - -
Pral4377g00008 1796 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pral4377g00008 1796 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pral4377g00008 1796 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Pral4377g00008 1796 SUPERFAMILY PIN domain-like 2 1150 IPR029060 -
Pral4377g00008 1796 CDD H3TH_XPG 1138 1280 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 1449 1466 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 946 969 - -
Pral4377g00008 1796 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Pral4377g00008 1796 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pral4377g00008 1796 Gene3D - 1135 1249 - -
Pral4377g00008 1796 Pfam Ubiquitin binding region 361 385 IPR025527 -
Pral4377g00008 1796 Pfam Ubiquitin binding region 232 253 IPR025527 -
Pral4377g00008 1796 Gene3D - 1 140 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 1474 1518 - -
Pral4377g00008 1796 CDD PIN_XPG_RAD2 2 92 - -
Pral4377g00008 1796 SMART HhH_4 1137 1170 IPR008918 GO:0003677|GO:0003824
Pral4377g00008 1796 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 945 998 - -
Pral4377g00008 1796 FunFam DNA repair protein UVH3 1 147 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 137 153 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 792 812 - -
Pral4377g00008 1796 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 1736 1762 - -
Pral4377g00008 1796 Gene3D - 992 1134 - -
Pral4377g00008 1796 SMART xpgineu 1066 1135 IPR006086 GO:0004518
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 791 841 - -
Pral4377g00008 1796 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1135 1342 IPR036279 -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 1359 1519 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 479 518 - -
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 130 153 - -
Pral4377g00008 1796 ProSitePatterns XPG protein signature 2. 1069 1083 IPR019974 GO:0016788
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 740 761 - -
Pral4377g00008 1796 SMART xpgn3 1 98 IPR006085 GO:0004518
Pral4377g00008 1796 MobiDBLite consensus disorder prediction 740 771 - -
Pral4377g00008 1796 Pfam XPG I-region 1069 1150 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4377g00008 Pral-Chr4377 21844 33124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4377g00008 1060 1167 Core DNA Replication Machinery Family AT5G26680 35.135 3.63e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4377g00008 K10846 - gmx:100820295 1683.69