Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4375g00059 ATGTGTGGAGGCGCTATCATCTCCGATTTCCTCCCTCAGAAACTTGGTCGGAAATCGACCGCCAACGACTTCTGGTCTGACCTGGAAACTGTCGCTGACCTCTTTGGACTCGATCCTACCGCTGCTCTTCCTTCCAAACACAGTCTGAAGCCTGAAGCTTCCCTTCATGATCAGAAACTCCCTCTGATTCCAACTACCCCAGTGACATGTGAGAATAGTAACAAAAGTGACAATAAAAACAAGAAGCCTGAGAAGAAAAGCGGAGGCGGAAGGACTCGCAAGAACATCTACAGAGGAATCCGGCAAAGGCCGTGGGGCAAGTGGGCCGCCGAGATAAGGGACCCACACAAGGGCGTCCGTGTCTGGCTTGGTACCTTCAACACCGCCGAAGAAGCCGCCAGAGCTTACGACAAAGCAGCCAAGCGCATCCGCGGGGACAAAGCCAAGCTCAACTTCCCGCCAGCTCCTCCTCCTCCTTTGTCTCCGACTCCGACTCCGGGTCCGGCTCCCCTGGAACCGCCCCAGAAGAAGCAGTGCCTCTTCCCCGTCCAAAACGACGCCGTTCAGCTCAGCCAACAAATCTCAACCCTCGAATCCTTCCTCGGTCTGGACGAAATCAACAACAACAAGAACAACACCGCTGATGTTTCGCAGCCGATGGGAGCAGGCGGTGGCATGCTGTCTGAGTGGGACCCCATGGACGATAACTGGATGCTGAACGACGTCGTTATGCACTACCTGCATCATAACGTTCACTTCTAG 762 0.5472 MCGGAIISDFLPQKLGRKSTANDFWSDLETVADLFGLDPTAALPSKHSLKPEASLHDQKLPLIPTTPVTCENSNKSDNKNKKPEKKSGGGRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDKAAKRIRGDKAKLNFPPAPPPPLSPTPTPGPAPLEPPQKKQCLFPVQNDAVQLSQQISTLESFLGLDEINNNKNNTADVSQPMGAGGGMLSEWDPMDDNWMLNDVVMHYLHHNVHF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4375g00059 253 MobiDBLite consensus disorder prediction 52 97 - -
Pral4375g00059 253 SUPERFAMILY DNA-binding domain 96 153 IPR016177 GO:0003677
Pral4375g00059 253 Gene3D AP2/ERF domain 96 154 IPR036955 GO:0003700|GO:0006355
Pral4375g00059 253 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Pral4375g00059 253 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Pral4375g00059 253 MobiDBLite consensus disorder prediction 151 175 - -
Pral4375g00059 253 MobiDBLite consensus disorder prediction 144 176 - -
Pral4375g00059 253 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Pral4375g00059 253 Pfam AP2 domain 97 145 IPR001471 GO:0003700|GO:0006355
Pral4375g00059 253 MobiDBLite consensus disorder prediction 75 91 - -
Pral4375g00059 253 PANTHER DNA-BINDING DOMAIN 61 189 IPR044808 GO:0003700|GO:0009873
Pral4375g00059 253 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Pral4375g00059 253 CDD AP2 96 152 IPR001471 GO:0003700|GO:0006355
Pral4375g00059 253 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4375g00059 Pral-Chr4375 385449 387376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4375g00059 1 246 AP2-EREBP Transcription Factor Family AT3G16770 44.170 8.48e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4375g00059 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4375g00059 K09286 - mnt:21388719 193.741