Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4375g00058 ATGTGTGGAGGCGCTATCATCTCCGATTTCCTCCCTCAGAAACTTGGTCGGAAATCGACCGCCAACGACTTCTGGTCTGACCTGGAAACTGTCGCTGACCTCTTTGGACTCGATCCTACCGCTGCTCTTCCTTCCAAACACAGTCTGAAGCCTGAAGCTTCCCTTCATGATCAGAAACTCCCTCTGATTCCAACTACCCCAGCAGTGACATGTGAGAATAGTAACAAAAGTGACAATAAAAACAAGAAGCCTGAGAAGAAAAGCGGAGGCGGAAGGACTCGCAAGAACATCTACAGAGGAATCCGGCAAAGGCCGTGGGGCAAGTGGGCCGCCGAGATAAGGGACCCACACAAGGGCGTCCGTGTCTGGCTTGGTACCTTCAACACCGCCGAAGAAGCCGCCAGAGCTTACGACAAAGCAGCCAAGCGCATCCGCGGGGACAAAGCCAAGCTCAACTTCCCGCCAGCTCCTCCTCCTCCTTTGTCTCCGACTCCGACTCCGGGTCCGGCTCCCCTGGAACCGCCCCAGAAGAAGCAGTGCCTCTTCCCCGTCCAAAACGACGCCGTTCAGCTCAGCCAACAAATCTCAACCCTCGAATCCTTCCTCGGTCTGGACGAAATCAACAACAACAAGAACAACACCGCTGATGTTTCGCAGCCGATGGGAGCAGGCGGTGGCATGCTGTCTGAGTGGGACCCCATGGACGATAACTGGATGCTGAACGACGTCGTTATGCACTACCTGCATCATAACGTTCACTTCTAG 765 0.5477 MCGGAIISDFLPQKLGRKSTANDFWSDLETVADLFGLDPTAALPSKHSLKPEASLHDQKLPLIPTTPAVTCENSNKSDNKNKKPEKKSGGGRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFNTAEEAARAYDKAAKRIRGDKAKLNFPPAPPPPLSPTPTPGPAPLEPPQKKQCLFPVQNDAVQLSQQISTLESFLGLDEINNNKNNTADVSQPMGAGGGMLSEWDPMDDNWMLNDVVMHYLHHNVHF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4375g00058 254 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Pral4375g00058 254 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Pral4375g00058 254 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Pral4375g00058 254 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Pral4375g00058 254 Gene3D AP2/ERF domain 97 155 IPR036955 GO:0003700|GO:0006355
Pral4375g00058 254 Pfam AP2 domain 98 146 IPR001471 GO:0003700|GO:0006355
Pral4375g00058 254 PANTHER DNA-BINDING DOMAIN 61 190 IPR044808 GO:0003700|GO:0009873
Pral4375g00058 254 SUPERFAMILY DNA-binding domain 97 154 IPR016177 GO:0003677
Pral4375g00058 254 CDD AP2 97 153 IPR001471 GO:0003700|GO:0006355
Pral4375g00058 254 MobiDBLite consensus disorder prediction 76 92 - -
Pral4375g00058 254 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Pral4375g00058 254 MobiDBLite consensus disorder prediction 145 177 - -
Pral4375g00058 254 MobiDBLite consensus disorder prediction 53 97 - -
Pral4375g00058 254 MobiDBLite consensus disorder prediction 152 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4375g00058 Pral-Chr4375 385449 387376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4375g00058 1 247 AP2-EREBP Transcription Factor Family AT3G16770 44.406 5.38e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4375g00058 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4375g00058 K09286 - mnt:21388719 194.512