Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4375g00031 ATGGTGTTAGGATGGAGTCGAAGGAAGAACAAGAACAGGAAGCTCAACTTGGAGCTTGTTACTCCAAACCATTTCGTTTGTCCTGTTTCTCTTGATCTGATGAAAGACCCCGTCACGTTATCATCTGGAATCACCTACGATCGTGCCAGCATCGAGCGGTGGCTCGAAGATGGGAATTTCACGTGCCCTGTAACGAATCAGATTCTCTCCAGCTTTGATCTCCTTCCCAATCACTCGCTTAGGGCTATGATTCAGGATTGGTGCGTTGAGAATCGTCGATTTGGGATCGAGAGAATTCCGACTCCCAGAATACCTGTTACTCCAACCCAAGTCGAAGAGATTGTTCTTCATCTTCACGCCTCGGCGTCTTGTTTGGATCGGTATGGTTTTCTACAAGGTGTGCAGAGAATCAAGGTATGGGGTTCAGAGAGCGAGAGAAACAGAAGGTGCATTGTGGACAATGGTACTCCTAGCGTCTTAGCCTCTGCGTTTCGTGAATTTGCGAATGATTCCGTTGAGGAAAATGGGAGTTTGCTGGAGGAGATTTTGAATGCCCTAAATTGGATGCTTCCGCTTCAATTCGAAGCCCAGAAAATTTTGCATTCTTCAGATGCCCTGCGTTGCTTGGTTTGGTTCCTCAAGAATCAAGATCTTTCCGGAAAACAGAATGCCATCGTTGCTTTGAGAGAGATCCTTTCTTCTGGTAATGAACAGACTTTTGAGACTATGACAGAAATCGAAGGGACCATTGATCTATTAGCGGAGTTCATTAACAAGAGAATAAACCCAGCAATCACGAAAGCTTCAATGGGGATTGTTTATTACTTGGTTTCATCTTCTTATCCATCAAGTGAGAAGGTGAAGCTGGAATTTATTGGCCTGGGTTTGATCTCTTCACTTCTGGAGATCCTAATTGACGCAGACAAGAGCCTATCTGAGAAAGCCTTGGGTGTTTTTGATTCACTCTGTGACTGTCAAAAAGGAAGAGAAAGGGCTTTCAGTAATGCTCTAACAGTTCCTGTATTGGTGAAGAAGATCTTAAGAGCTTCTGCTTTGGCCACAGATCACTGTGTGTCTGCAATCTGGAAGTTATGCAGATATGGATCCAAAGATGATGATGAAGACGAAGTAGAAGAAGCTCTGGTTGAAGCACTTCAAGTTGGTGCGTTTCAGAAGCTGTTAGTAGTATTGCAGGTTGGTTGTGGTGATGAAACGAAGGAGAAAGCAACAGAGCTTCTGAAATTGTTCAATCCTTATAGGGCTGGCTTGGAATGCATGGACTCAGATTTCAAGAATGTCAAGAGATCATTTTGA 1314 0.4399 MVLGWSRRKNKNRKLNLELVTPNHFVCPVSLDLMKDPVTLSSGITYDRASIERWLEDGNFTCPVTNQILSSFDLLPNHSLRAMIQDWCVENRRFGIERIPTPRIPVTPTQVEEIVLHLHASASCLDRYGFLQGVQRIKVWGSESERNRRCIVDNGTPSVLASAFREFANDSVEENGSLLEEILNALNWMLPLQFEAQKILHSSDALRCLVWFLKNQDLSGKQNAIVALREILSSGNEQTFETMTEIEGTIDLLAEFINKRINPAITKASMGIVYYLVSSSYPSSEKVKLEFIGLGLISSLLEILIDADKSLSEKALGVFDSLCDCQKGRERAFSNALTVPVLVKKILRASALATDHCVSAIWKLCRYGSKDDDEDEVEEALVEALQVGAFQKLLVVLQVGCGDETKEKATELLKLFNPYRAGLECMDSDFKNVKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4375g00031 437 CDD RING-Ubox_PUB 22 74 IPR045210 -
Pral4375g00031 437 SUPERFAMILY RING/U-box 21 97 - -
Pral4375g00031 437 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Pral4375g00031 437 Pfam U-box domain 22 92 IPR003613 GO:0004842|GO:0016567
Pral4375g00031 437 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Pral4375g00031 437 PANTHER WDSAM1 PROTEIN 20 416 IPR045185 GO:0061630
Pral4375g00031 437 SUPERFAMILY ARM repeat 142 415 IPR016024 -
Pral4375g00031 437 Gene3D - 119 415 IPR011989 -
Pral4375g00031 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
Pral4375g00031 437 FunFam RING-type E3 ubiquitin transferase 21 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4375g00031 Pral-Chr4375 235906 237608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4375g00031 2 437 U-box Gene Family AT5G37490 41.686 3.86e-106 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4375g00031 - - gmx:100794340 558.14