Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4375g00028 ATGGACGCCAGGACGGCGATGAGAAGACGAGACGACGACGACGACGACGACGAAGAAGAGTTCAACTCCGCCAGGAAGCAGCCACGCAAAAGATTTCGCTTTCGGCCACGTCTCCATTTGTGTTTCGCCGACCCCGATTCTAGTTGGCGAACCGGAAGCGCCCCGCGCGGTAGCGCCACCGCTGATCTCCACCGCCGATTCCTGATTCGTCCAGACAACGGATGGTACATCTTGTGGAAGTATTTCATTCTGTTATGGGCGGTGTACTCTTCCTTCTTCACTCCTCTAGAGTTCGGGTTCTTCAGAGGATTGCCGGAGGAAGTCTTCTTGCTCGACATCGCCGGCCAGTTTGCTTTCCTTGTTGACATCGCCATCCGATTCTTCGTCGCCTATCGTGACATCCATTCCTATTGCATGGTCTACGATCACACTCAAATTGCCACGAGGTACCTGAAGTCTCGGTTCACAGTTGATATTCTTAGCTGTCTTCCGTGGGATTATATTTACAAGGCAACTGGGAGGAAAGAAGCCGTCAGGTATTTTTTATGGATTAGGCTAAGTCGAGCATGTAGAGTGACAGAGTTTTTTGAGAGGCTGGAGAAAGATATTAGGATCAATTACCTCTTTACTAGGATCGCGAAACTTCTTGTTGTAGAACTATATTGCACCCACACAGCTGCCTGTATCTTCTACTATCTTGCTACCACTTTGCCTCCATCAAACGAAGGTTATACATGGATAGGCAGCTTAAAGATGGGTGATTATAGCTATACAGACTTTAGACATATCAATCTTTGGAAGCGTTATGTGACATCGCTCTACTTTGCAATTGTTACGATGGCAACTGTTGGCTATGGAGACATTCATGCGGTCAATGTCAGGGAGATGATATTTGTCATGATATATGTCTCCTTTGATATGATTCTTGGTGCTTACCTTCTTGGTAATATGACAGCACTGATTGTGAAAGGATCAAAAACAGAGAGGTTTAGGGATAAAATGGCTGATATTATCAAGTACATGAATAAAAACAATTTGGACAAGCAGATAACTAAAGCGATAAAAGGCCATTTACGCTTACAGTATGATCGCAGTTACACTGAGGCAGCTGTGCTTCAGGATATTCCAGCCTCTATTCGTGCAAAGATTTCAGTGAATTTGTATGAGAAATTTATACAAGAAGTTTCTCTTTTCAAGGGATGCTCTTTGGGGTTCATTAAGCAAATTGCAATCAGAGTACATGAAGAGTTTTTCCTTCCAGGAGAAGTGATTATGGAGCAAGGAAATCTAGCCAATCAACTTTACCTTGTATGCGATGGTGAGCTGGTTGAGATGAGGAGAGAAGATGTTGATAAAGAAGTGTTCATAAGGCATTTGCAAGACCACTGTTTCTTTGGCGAGGTTTCTTTTCTTTGTGATATACCTCAACCTTCAACAGTACGAGCATGTGAATTTTGCAAGGTTTTGCGACTTGATAAGCATTCCTTTATGGAAACACTGAAGGTGTATTTTGCAGATGGTCGAGCTATCATGAACAATCTCCTCGAGGGAAAAGATTCCAGTATTCAGCAGAAGCTCCTGCAATCAAACTTCTCCTTGATTCTTGAAAATCATGAAAAAGAGATGGTTATGAGAATGAATTGTGCTGCATACGAAGGGGACATTCACTTTTTGAAACGTTTGATTGAATCAGGAGCAGATCCCAACAAGACTGATTATGATGGTAGATCACCCTTGCTTATTTCTGCATCAAAAGGATATGTAGAAATCGTTCATTTTCTTATTGCACATGGAGTGATTATCAACTTCTCTGATAAATTTGGAAGTTCCCCCTTGTTTGAAGCCATCAAGAATGGACATGAAGAAGCATCTTCTTTACTTGTGGATGCGGGGGCTACTCTTACCATGGATCATGCTGGGAACTTTCTTTGCATGACTGTTGCAAACAAGGAGTTGAGCCTTCTAAGGCGGGTCTTGGATTACGGTATAAATCCAAATGCCAGGAATTATGATCAGCGTACACCTCTTCACATAGCCGCCTCTGAAGGTTTGTGTAAAATGGCTGAGTTGCTTCTAGAAGCAGGAGCAAGTGTTTTATCAAAGGACAGATGGGGAAATACGCCGCTTGATGAAGCTCATATGGGTGGAAATAGGAACATGATCAAAATGCTCCAAGTTGCAAAAATTTCTCAGTTGACCGAATTATCCCACAGTATACAAGAATCTCGAGCAAAAGTGCTATTACCTTCAACAGATGAAATTCCAAGAAAGAAATGCACTGTGTTTCCTTTCCATCCATGGGATCACAAAGAGGAAAGAAGACAGGGAGTTGTCTTATGGGTTCCAAAAAGCATTGAAGAACTTGTGCAGGTGGCAATGAAACATCTGAACTCTTCAAGTGGTTCCTGTATTTTATCAGAACATGGGGGTAAAATTCTTGACGTCGACTTGATTGGCAATGATGATAAGCTATTTCTGGTGAGGGAAGAACAAGCAGAGAGTTCATAA 2508 0.4258 MDARTAMRRRDDDDDDDEEEFNSARKQPRKRFRFRPRLHLCFADPDSSWRTGSAPRGSATADLHRRFLIRPDNGWYILWKYFILLWAVYSSFFTPLEFGFFRGLPEEVFLLDIAGQFAFLVDIAIRFFVAYRDIHSYCMVYDHTQIATRYLKSRFTVDILSCLPWDYIYKATGRKEAVRYFLWIRLSRACRVTEFFERLEKDIRINYLFTRIAKLLVVELYCTHTAACIFYYLATTLPPSNEGYTWIGSLKMGDYSYTDFRHINLWKRYVTSLYFAIVTMATVGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMADIIKYMNKNNLDKQITKAIKGHLRLQYDRSYTEAAVLQDIPASIRAKISVNLYEKFIQEVSLFKGCSLGFIKQIAIRVHEEFFLPGEVIMEQGNLANQLYLVCDGELVEMRREDVDKEVFIRHLQDHCFFGEVSFLCDIPQPSTVRACEFCKVLRLDKHSFMETLKVYFADGRAIMNNLLEGKDSSIQQKLLQSNFSLILENHEKEMVMRMNCAAYEGDIHFLKRLIESGADPNKTDYDGRSPLLISASKGYVEIVHFLIAHGVIINFSDKFGSSPLFEAIKNGHEEASSLLVDAGATLTMDHAGNFLCMTVANKELSLLRRVLDYGINPNARNYDQRTPLHIAASEGLCKMAELLLEAGASVLSKDRWGNTPLDEAHMGGNRNMIKMLQVAKISQLTELSHSIQESRAKVLLPSTDEIPRKKCTVFPFHPWDHKEERRQGVVLWVPKSIEELVQVAMKHLNSSSGSCILSEHGGKILDVDLIGNDDKLFLVREEQAESS 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4375g00028 835 FunFam Potassium channel KAT2 385 521 - -
Pral4375g00028 835 SMART ANK_2a 574 603 IPR002110 GO:0005515
Pral4375g00028 835 SMART ANK_2a 541 570 IPR002110 GO:0005515
Pral4375g00028 835 SMART ANK_2a 607 636 IPR002110 GO:0005515
Pral4375g00028 835 SMART ANK_2a 671 700 IPR002110 GO:0005515
Pral4375g00028 835 SMART ANK_2a 638 667 IPR002110 GO:0005515
Pral4375g00028 835 SMART ANK_2a 704 734 IPR002110 GO:0005515
Pral4375g00028 835 ProSiteProfiles cAMP/cGMP binding motif profile. 397 500 IPR000595 -
Pral4375g00028 835 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Pral4375g00028 835 Pfam Ankyrin repeats (3 copies) 548 636 IPR002110 GO:0005515
Pral4375g00028 835 SUPERFAMILY Voltage-gated potassium channels 71 322 - -
Pral4375g00028 835 Gene3D Jelly Rolls 387 508 IPR014710 -
Pral4375g00028 835 FunFam Potassium channel SKOR 77 322 - -
Pral4375g00028 835 Gene3D Helix hairpin bin 325 386 - -
Pral4375g00028 835 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Pral4375g00028 835 SMART cnmp_10 397 515 IPR000595 -
Pral4375g00028 835 Gene3D - 637 738 IPR036770 -
Pral4375g00028 835 ProSiteProfiles KHA domain profile. 758 835 IPR021789 -
Pral4375g00028 835 Gene3D - 77 323 - -
Pral4375g00028 835 SUPERFAMILY Ankyrin repeat 540 724 IPR036770 -
Pral4375g00028 835 Pfam Cyclic nucleotide-binding domain 417 501 IPR000595 -
Pral4375g00028 835 MobiDBLite consensus disorder prediction 1 28 - -
Pral4375g00028 835 Pfam Ankyrin repeats (many copies) 659 712 IPR002110 GO:0005515
Pral4375g00028 835 Gene3D - 509 636 IPR036770 -
Pral4375g00028 835 ProSiteProfiles Ankyrin repeat region circular profile. 574 606 - -
Pral4375g00028 835 Pfam KHA, dimerisation domain of potassium ion channel 757 826 IPR021789 -
Pral4375g00028 835 ProSiteProfiles Ankyrin repeat region circular profile. 671 703 - -
Pral4375g00028 835 PANTHER POTASSIUM CHANNEL AKT1 58 830 IPR045319 GO:0005249|GO:0006813
Pral4375g00028 835 SUPERFAMILY cAMP-binding domain-like 325 515 IPR018490 -
Pral4375g00028 835 CDD CAP_ED 397 511 IPR000595 -
Pral4375g00028 835 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Pral4375g00028 835 PRINTS EAG/ELK/ERG potassium channel family signature 221 231 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4375g00028 835 PRINTS EAG/ELK/ERG potassium channel family signature 313 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4375g00028 835 PRINTS EAG/ELK/ERG potassium channel family signature 269 286 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4375g00028 835 PRINTS EAG/ELK/ERG potassium channel family signature 112 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4375g00028 835 PRINTS EAG/ELK/ERG potassium channel family signature 480 488 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4375g00028 835 Pfam Ion transport protein 78 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4375g00028 Pral-Chr4375 219211 228672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4375g00028 7 703 Ion Channels AT5G37500 57.282 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4375g00028 K21867 - qsa:O6P43_005230 1136.32