Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4375g00024 ATGCTAGCGAATAATTCTCTTGCTTCGGTTCCTACTTCTGAGCCGCCCTTTGCTTGCGGCGATAATGGCACTGTCACGACGAATAAGAGAAAGAGAAGACCCGCGGGAACTCCAGATCCGGACGCGGAGGTGGTGTCGCTGTCGCCGAAGACGTTACTGGAATCGGACCGGTACGTGTGCGAGATCTGTAATCAGGGTTTTCAGAGGGACCAGAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACGCCGGCGGCGAGGAAGCGCGTCTTTGTCTGCCCGGAGCCGACGTGCTTGCACCACGACCCGTGCCACGCGCTCGGTGATCTCGTCGGAATAAAGAAACACTTCAGAAGAAAACACAGTAACCACAAACAATGGGTCTGTGAACGATGCTCTAAAGGCTACGCAGTTCAGTCTGATTACAAAGCTCATCTCAAAACCTGTGGAACCAGAGGCCATTCTTGTGATTGTGGTCGTGTTTTCTCCAGGGTAGAGAGCTTTATCGAACACCAAGATGCTTGTAACATGGGGCGGCTCCGGACGGAAACACAGCCGCAGCCACCGCCGGCGTGCTTGTCACGGACGGCTTCGAGTCCGAGTCCGTCGAGTGAAACCAATTTCAGCACCGGTCCGAACTGGAATAATGGTCTGGTGTTGCCAAAGCCTCCTGAACCGGCGGCATTATTGTTGAACCCTACCATTAATAATACTGTTGTTCATGAAACCTCATCGAACAACAAGTATAAACTGTGTCCAAACTTGGATCTTCGGCTCTCCACTTCCAGTTCTATCATTCCCACTGATACCGAATCACCTAAGAGAGACGAACCGCGGTCAAATCGCTTTCGGATTTCGATCGGTTCGTCGTCGGAAATCGGCCAGAAAAATGAATCCAACTGCTTCAATAATAATCGCAGGAATTCACCCAAGGAGAGCTGTAACAGCAGCGATAAACCACAAGGTTTGAGGAATATGGTTCGTAATAAAGAAGAAGGACGTGAGCAGTTGAGGTTAGCCATGGCGGAAAAGGCATATGCAGAAGAAGCAAGAAAGCAAGCAAAACGACAGATAGAAGTTGCAGAGAAGGAGTTTGCTAATGCAAAGAGAATCAGACAAGAAGCTCAAGCTGAACTTGACAAAGCCTGCGCCATTAAACAACATGCCATCAAACAGATTAACTCTCTCATGCTTCAGATCACTTGTCAAGCTTGTAAACGACAATTTGGAGCCCAAACGACACCGACAATGACGTTATTGACGGCTCCTCCACCGCCGGTGCCGGACGAGAACTCCTTGGCAGTAAGCTACATGTCGTCTGCTCTAACAACTGAGGGTGGCGAGGAAGAAAACTATAACAATAACGAGAAAAATGATGGGAAAAATAGTAACTCTTTATCATCTGTCTAG 1434 0.4958 MLANNSLASVPTSEPPFACGDNGTVTTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTETQPQPPPACLSRTASSPSPSSETNFSTGPNWNNGLVLPKPPEPAALLLNPTINNTVVHETSSNNKYKLCPNLDLRLSTSSSIIPTDTESPKRDEPRSNRFRISIGSSSEIGQKNESNCFNNNRRNSPKESCNSSDKPQGLRNMVRNKEEGREQLRLAMAEKAYAEEARKQAKRQIEVAEKEFANAKRIRQEAQAELDKACAIKQHAIKQINSLMLQITCQACKRQFGAQTTPTMTLLTAPPPPVPDENSLAVSYMSSALTTEGGEEENYNNNEKNDGKNSNSLSSV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4375g00024 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 447 IPR031140 -
Pral4375g00024 477 Coils Coil 331 386 - -
Pral4375g00024 477 SMART c2h2final6 135 162 IPR013087 -
Pral4375g00024 477 SMART c2h2final6 58 80 IPR013087 -
Pral4375g00024 477 SMART c2h2final6 99 129 IPR013087 -
Pral4375g00024 477 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 424 477 - -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 188 228 - -
Pral4375g00024 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 271 333 - -
Pral4375g00024 477 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Pral4375g00024 477 Gene3D Classic Zinc Finger 36 100 - -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 291 331 - -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 188 224 - -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 441 457 - -
Pral4375g00024 477 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Pral4375g00024 477 FunFam protein indeterminate-domain 12-like 37 105 - -
Pral4375g00024 477 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4375g00024 Pral-Chr4375 166745 170338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4375g00024 21 459 C2H2 Transcription Factor Family AT2G01940 55.507 3.89e-150 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4375g00024 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4375g00024 K25871 - gmx:100800187 594.734