Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4369g00010 ATGTGCTGTGGAGATATCTTACGTTTGTCGGAATCCAAGTGCAAGTCATGCAACCATGTGACGATCACTGATGATGTTGAAGACTGGGTGTATAACCAGTTAGAAAACACGACTCATCTTTTACATGGTGTTGTCCATGCAAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCGAGATTTCTTTCAGGTTGTCATATCATGAACTTTTGGGATCGTCTCTGCAAGTCACTTGGAGCCAGAGAAATTAGTGTAATGGATGTTTCAAAGAAATATGGGCTGGAGTACCGCCTGATCCATGCCATTACAAAGGGTCATCCCTGGTATGGTGATTGGGGCTACCAATTTGGCACTGGTAGCTACGGTCTCACGCACGAAGAATATATGTCTGCGGTTGAATGCCTTTCCAATCTACCATTGTCCCTATTCCTCTCTGAAGCACAGAGACCTGATTATCGATTGCGGGACACAATCTCATATTACCAGTCATTGTCTGAAACTGGGCTTGTAAATATAAGGGATCTCTTTTGTTTTTTGATTGGTTTGATTCATGATGCTCACATGACAGTGTCAAGGGCTGATGATGTCACTTGCAAGAAGCGCCGTTGTAACGCTGCAGGAGTGTCATGTTTCTCTTCAATGAGTGACATTGAACGTGTGGAGGGAGCAATGCTCAGAGTATTGCGTGCAGTGTCAGGATCCAATTGGGTGAACTGGCGTACTCTTAAGGGTGCTGTCTGCAAAGTGGCCTCTCCAGAGCTTCTTGACTATTGTCTGGGAGAACTAGGAGGAAAAGCAATATTTGGTGGTATGGTTGTCAATACCCGATGCAATCCTGTTACTGGAGCTTTCGAGTACAGACTAGAGGCAGGGAACAGCTTTTCCCATGGGACAACAGCAAGCAATAAATCTTTGCGTTCTAAGTATCCATCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATACGAGTCTTTGCTTCATCCGCATAAGATGTTAAGATATGACTCTGGGGGGACAAGGACTGCAGCAACGAGCTCTGCACAAAAACTTCTTGACTGCAAGCATTTTGTAAAAGATTATAGGCCTGAGATGTTGCCAATGACAAGCGTGAATAGGATACGCCTCTCATGTCAGGTAGTACTAGTTGATGAAACTGATGAAGCTTTTGCAAGTCCTCCCCCAGAATTAATTGTCCTGCCCCGGAATGCCACTGTGTCCGACCTCAAGACTGAAGCATCTAATGCTTTTCAAGATGTATATCTTGTGTTTAAGAGATTTCAAGTGGATGAGCTTTTTGGCTGTAGCTCTGCAGATGATTCCACTCCCGTCAAACTCTTGATAGGATCGACAGAATTGGTTCGTGTCCAAGGAAAATGCATTGGGAAGAATGTATTGAGCAAGTTCCAAAGGGAACGTGGAATTGAGAGGTGGACCGTCGATTGCAGCTGTGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCGTGTGATGTGTGTGGGGTGTGGAGGCACACTAGGTGTTCTAGTATTCATGATGCAGATCCTGTCCCTGTGAGGTTTTTATGCCCAAGATGCCAAAATTTTGAGTTGAAGCCGCATTCAAGTGGACACTGA 1629 0.4524 MCCGDILRLSESKCKSCNHVTITDDVEDWVYNQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMNFWDRLCKSLGAREISVMDVSKKYGLEYRLIHAITKGHPWYGDWGYQFGTGSYGLTHEEYMSAVECLSNLPLSLFLSEAQRPDYRLRDTISYYQSLSETGLVNIRDLFCFLIGLIHDAHMTVSRADDVTCKKRRCNAAGVSCFSSMSDIERVEGAMLRVLRAVSGSNWVNWRTLKGAVCKVASPELLDYCLGELGGKAIFGGMVVNTRCNPVTGAFEYRLEAGNSFSHGTTASNKSLRSKYPSEVNLLHDLRYLYESLLHPHKMLRYDSGGTRTAATSSAQKLLDCKHFVKDYRPEMLPMTSVNRIRLSCQVVLVDETDEAFASPPPELIVLPRNATVSDLKTEASNAFQDVYLVFKRFQVDELFGCSSADDSTPVKLLIGSTELVRVQGKCIGKNVLSKFQRERGIERWTVDCSCGAKDDDGERMLACDVCGVWRHTRCSSIHDADPVPVRFLCPRCQNFELKPHSSGH 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4369g00010 542 CDD PHD_MMD1_like 485 530 - -
Pral4369g00010 542 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 3 539 - -
Pral4369g00010 542 SMART PHD_3 485 531 IPR001965 -
Pral4369g00010 542 SUPERFAMILY FYVE/PHD zinc finger 473 532 IPR011011 -
Pral4369g00010 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 534 IPR013083 -
Pral4369g00010 542 Pfam PHD-finger 486 532 IPR019787 -
Pral4369g00010 542 ProSitePatterns Uncharacterized protein family UPF0054 signature. 42 52 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4369g00010 Pral-Chr4369 29721 41050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4369g00010 34 530 PHD Transcription Factor Family AT5G22260 30.608 2.96e-76 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4369g00010 PHD 2e-08 CL0390