Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4366g00002 ATGCCTCCTGTAGCTCCCTCTGAGAGCCCCAAAGGAAAGAAGGAGAAAAAGGAGAAGAAGACTAAGAACAAAATTTCAACTGAAGAGGCATCCATTGGTAAGGAGAGCACGAAAAGTTCTAAGCTTACAAGAAATATGAAGGTGTCTGATTCTGACCAAGATGGGTTTTCGGACAAGAAGGCGAAGAAGAAGGAGACCAAGAAGCGTAAATCTTCGGATATTGATGGGGTTGGAGAGAAGAGCGAGAGTAGCTCGGAGTTAGTTGAGCCTCAAAGTTCGAGGGCGAAGAGTCAGGAGAAGAGAAACAATAACAAAAAGCCGAAATTCGAGGAACCTGACATGGGGGAGGAGGAGGTCGAGAAGAAGAAGGATCCCAATGCAATTTCGAACTTTCGGATATCGAAGCCCTTGCGGGCGAAGTTGAAGGAGAAAGGGATTGAATCTCTATTTCCCATTCAGGCCATGACCTTTGATACCATTCTCGATGGTTCTGATTTGGTCGGTCGGGCGCGCACTGGTCAGGGTAAAACACTGGCTTTTGTGTTGCCCATATTAGAGTCTTTAACCAATGGTTCGGCTAAGGCATCCAGAAAGACTGGCTATGGGAGGTCTCCAAGCGTTCTTGTGCTCTTGCCCACTAGAGAATTGGCCTCTCAGGTGTTCTCTGACTTTGAAGTCTATGGTGAGGCGTTGGGTTTGATTTCCTGCTGTTTGTATGGTGGAGCTCCATATCAAGCTCAAGAAATTAAGCTCAAGCGAGGTGTCGATATTGCTGTTGGAACACCAGGCCGCATAAAGGATCATATAGAGAGACAAAATATTGACCTAACTCAACTAAGGTTCCGTGTCCTTGATGAGGTAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAATTCATTCTGGGTAAGGTTAAAGATGTTAGTAAAGTTCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTTCCTCAAAGTTTCTGAAACCAGATAAGAAAACTGTTGACCTCGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTACGAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGCCATAGCAGTGGAGGCCGGACAATCATATTTACTGAGACAAAGGAGTCAGCTTCTGAGCTTGCAGGGCTTTTGCCTGGAGCTCGAGCTCTACATGGGGACATACAACAAGCACAACGTGAGGTCACATTGTCTGGCTTTAGGTCTGGAAAATTCATGACATTAGTGGCCACAAATGTAGCAGCTCGGGGATTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGCCTATATTCATCGTTCTGGCCGCACAGGACGAGCAGGCAATACTGGAGTCGCAGTTATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAGAGAATCAGGCGTGAAATTTGAGCACATATCAGCTCCTCAGCCTGTTGACATTGCGAAAGCTGTTGGTGGTGATGCTGCTAAAATGATAAACCAAGTGTCCGACAGTGTAATTCCTGCATTCAAGTCTGCTGCTGCGGAACTTTTGAACAACTCTGGTTTAACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCATGGCTGTTGGTTGTACCGAGATAAAGAAAAGATCACTTCTTACTTCCATGGAGAATTATGTCACATTACTTCTTGAGATTGGAAGACCCATCTTCACACCATCTTTTGCATATGGAATCCTCAGGAGATTTCTGCCTGAGGAGAAGGTTGAGGCAGTGAAGGGTCTTACTCTAACTGCAGATGGAAATGGCTCCGTCTTTGACGTGCCAGCTGAAGATTTAGATATATATCTTGCTGGTCAGGAAAATGCTGCTAATATAAGCTTAGAAGTATTAGAAGAATTGCCACGTTTGCAAGAAAGAGACCAGTCAAGAGGGGGCAGATTTGGTGGTGGTGGTCGTGGCGGGTTTGGTAATAATAGAAGTAGTGGCCGTGGAAACAAGTTTTCCGGTGGAAGAGGAGGTGGCAAGAATGGTGGTTTCTCAAATCAGAGGAGTGATCGGTTTTCCGGTGGTTCTTATGGTGGGAGAGGCCGTGGCGGCAATAGAGGGGGGAAGAGATGGTAA 2175 0.4515 MPPVAPSESPKGKKEKKEKKTKNKISTEEASIGKESTKSSKLTRNMKVSDSDQDGFSDKKAKKKETKKRKSSDIDGVGEKSESSSELVEPQSSRAKSQEKRNNNKKPKFEEPDMGEEEVEKKKDPNAISNFRISKPLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGSAKASRKTGYGRSPSVLVLLPTRELASQVFSDFEVYGEALGLISCCLYGGAPYQAQEIKLKRGVDIAVGTPGRIKDHIERQNIDLTQLRFRVLDEVDEMLRMGFVEDVEFILGKVKDVSKVQTLLFSATLPDWVKHISSKFLKPDKKTVDLVGNEKMKASTNVRHIVLPCTSSARSQLIPDIIRCHSSGGRTIIFTETKESASELAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPVDIAKAVGGDAAKMINQVSDSVIPAFKSAAAELLNNSGLTAVELLAKALAMAVGCTEIKKRSLLTSMENYVTLLLEIGRPIFTPSFAYGILRRFLPEEKVEAVKGLTLTADGNGSVFDVPAEDLDIYLAGQENAANISLEVLEELPRLQERDQSRGGRFGGGGRGGFGNNRSSGRGNKFSGGRGGGKNGGFSNQRSDRFSGGSYGGRGRGGNRGGKRW 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4366g00002 724 Gene3D - 575 650 - -
Pral4366g00002 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 157 339 IPR014001 -
Pral4366g00002 724 CDD SF2_C_DEAD 354 480 - -
Pral4366g00002 724 MobiDBLite consensus disorder prediction 45 61 - -
Pral4366g00002 724 CDD GUCT_RH7_like 567 652 - -
Pral4366g00002 724 MobiDBLite consensus disorder prediction 656 724 - -
Pral4366g00002 724 MobiDBLite consensus disorder prediction 9 35 - -
Pral4366g00002 724 MobiDBLite consensus disorder prediction 1 123 - -
Pral4366g00002 724 Pfam DEAD/DEAH box helicase 150 327 IPR011545 GO:0003676|GO:0005524
Pral4366g00002 724 Gene3D - 351 574 IPR027417 -
Pral4366g00002 724 FunFam DEAD-box ATP-dependent RNA helicase 7 577 649 - -
Pral4366g00002 724 Gene3D - 75 342 IPR027417 -
Pral4366g00002 724 SMART ultradead3 145 357 IPR014001 -
Pral4366g00002 724 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 54 521 - -
Pral4366g00002 724 Pfam GUCT (NUC152) domain 560 655 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pral4366g00002 724 SUPERFAMILY RNA-binding domain, RBD 564 647 IPR035979 GO:0003676
Pral4366g00002 724 MobiDBLite consensus disorder prediction 93 123 - -
Pral4366g00002 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 510 IPR001650 -
Pral4366g00002 724 Pfam Helicase conserved C-terminal domain 371 471 IPR001650 -
Pral4366g00002 724 CDD DEADc 137 334 - -
Pral4366g00002 724 SMART helicmild6 394 471 IPR001650 -
Pral4366g00002 724 MobiDBLite consensus disorder prediction 68 82 - -
Pral4366g00002 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 483 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4366g00002 Pral-Chr4366 8174 12203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4366g00002 163 477 Eukaryotic Initiation Factors Gene Family AT1G72730 31.661 9.64e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4366g00002 K16911 - qsa:O6P43_005503 987.252