LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4365g00009	ATGGGTGTGAAGCATTTGTGGGATATACTCGAATCCTGCAAGAAAACAGTTCCACTTCACCATCTCCAGAACAAGAGGATATGCATTGATCTCTCATGTTGGATAGTTCAACTTCAGAATGTGGGCAAATCAATCTCATGTGTGAAGGAGAAAGTCCACCTCAGGGGTCTCTTCCACCGCATTAGAGCGCTCATTGCTTTGAATTGTAGCCTAATTTTCGTTACAGATGGATCAATTCCTGCTATTAAATTATCAACTTATAGGCAACGATTAAACTCTGGAAAAGATGTAACACAAAATGGAAGCAACTTACAGAAAATGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTCGCATCTTGGGAATGGCCCTCGGCATTCCTTGTTTGAATGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCCGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATATTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGATGGGGGGTATGTTGTTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGATTTGGAAGGGATTCATTGATTGCTCTTGCCTTACTTCTTGGAAGTGATTATAATCAAGGAGTCTATGGTCTAGGTCCGGAGTCAGCTTGTCAGATAGTTAGATCTATTGGTGACAAACATGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAAGACTGAAAGGTGCAAAGAAGCAGGGACAAGTCTTGAAGGACAACAACAAAGAAAATATGTTGGACCATGATATGGCATTGAGTCATGCTTGTCAGGTTCAAATCTCTGTTTCTATCTTTTTTGTACACGCAGGAGGCGGGAACAATTCGCAGAGAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTAAAGCCGAAATGCCACCCTGTGGATTCTGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGTAGTAAACTCCAGCAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATGTCCTTCCAAAGATAGCTGAAAGGGATTTACGGCGATTTGCCAATATGCGCTTAACGTCATCAGAAGTAGGACTGAATCTTCCTTTGAATGAGATCCCTGTAAAGTGTCCGGTCTCGGAAATCATTAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTATGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAATACCGGCAGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTTTGGAGTTTGACGAGAAAAAAGGTCTGCTTAAGAAACAAAATGCTCAAAAAAGAAGACCAAAGAAAACTGAAACTGCATCTTCTATGGCTGAACTTGACCTGCAACTTACGAATCTATCACTGAATATCGAGCTGGGAGACCACGCCAATCACAATGCCTCCGATTCATCAGAACAGGTCTTTCAAGATGCATCTGCCGTGGATGAAGCTTATCTGAATAACAGAGACTTGTCAAGTTCATCACTTGATGAACAGATCGAATGGAATCAAAATGTGAGAAACACATCTGACGGTCAGCAGAGTGATTCCGTGGCTAAAAATGAGGTCATTGATTTACTGAGTCCTTCTCCAACTAAGCAGTTGTATGCTTCCTCCAAGTGTCAACAATTTATTGGTGAACACGTTGAGGTTATAAATTTGAGTGAATCAGAGAGTGACACGTCACCTGAACATAAGAGGAAAGCAAAGGAGCTGAGAATGTTCTTAGCGGGAATTAAGAATGACCTCCATTGA	1836	0.4085	MGVKHLWDILESCKKTVPLHHLQNKRICIDLSCWIVQLQNVGKSISCVKEKVHLRGLFHRIRALIALNCSLIFVTDGSIPAIKLSTYRQRLNSGKDVTQNGSNLQKMSSLPRNRGSEFSCMIKEARILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYNQGVYGLGPESACQIVRSIGDKHVLQKFASEGIECLKRLKGAKKQGQVLKDNNKENMLDHDMALSHACQVQISVSIFFVHAGGGNNSQRDYNFLQVINAYVKPKCHPVDSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYVLPKIAERDLRRFANMRLTSSEVGLNLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIIPADLLKSACPEKILEFDEKKGLLKKQNAQKRRPKKTETASSMAELDLQLTNLSLNIELGDHANHNASDSSEQVFQDASAVDEAYLNNRDLSSSSLDEQIEWNQNVRNTSDGQQSDSVAKNEVIDLLSPSPTKQLYASSKCQQFIGEHVEVINLSESESDTSPEHKRKAKELRMFLAGIKNDLH	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4365g00009	611	Gene3D	-	2	198	-	-
	Pral4365g00009	611	Gene3D	-	200	259	-	-
	Pral4365g00009	611	CDD	PIN_GEN1	2	197	-	-
	Pral4365g00009	611	SMART	xpgn3	1	97	IPR006085	GO:0004518
	Pral4365g00009	611	FunFam	Flap endonuclease GEN-like 1	199	256	-	-
	Pral4365g00009	611	SUPERFAMILY	Chromo domain-like	397	449	IPR016197	-
	Pral4365g00009	611	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	71	90	IPR006084	-
	Pral4365g00009	611	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	204	219	IPR006084	-
	Pral4365g00009	611	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Pral4365g00009	611	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	129	146	IPR006084	-
	Pral4365g00009	611	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	150	170	IPR006084	-
	Pral4365g00009	611	CDD	H3TH_XPG-like	202	245	-	-
	Pral4365g00009	611	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	581	IPR006084	-
	Pral4365g00009	611	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	199	375	IPR036279	-
	Pral4365g00009	611	SMART	xpgineu	130	199	IPR006086	GO:0004518
	Pral4365g00009	611	SMART	HhH_4	201	234	IPR008918	GO:0003677\|GO:0003824
	Pral4365g00009	611	Pfam	XPG N-terminal domain	1	91	IPR006085	GO:0004518
	Pral4365g00009	611	SUPERFAMILY	PIN domain-like	3	214	IPR029060	-
	Pral4365g00009	611	Pfam	XPG I-region	133	214	IPR006086	GO:0004518

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4365g00009	Pral-Chr4365	31359	36604	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4365g00009	1	235	Core DNA Replication Machinery Family	AT5G26680	26.923	3.54e-14	73.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4365g00009	K15338		-	qsa:O6P43_008236	830.476