Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4364g00024 ATGTACGTCTCTGGCGCCGTCGTTCCTCACTCAGCTACTTCACCTTCGCCGTTGCCGCCGCCGCCGATGCCTCCTGGTGGCGTCGACTTCGCTATTTTTGTCAAGGCCACAGCCGCCGTATGCGCTGTTATATTCGTCACTGTCTTTTCGGTCTACCTCAATTACTGGACCGCGCTAATGTTCGCCAGCCAGAACCATACGGCCGGTGGCCTTGACGGCGTCAGTTGGCGGTGTTCTTGCTCTCGAGGAATCGACCGGGAAGTCCTGGATACATTCCCGATCCTCGTGTATTCTACCATAAAAAACCACAAGATCGGAAAAGGAGAGCTCGAATGCGCAGTGTGCTTGAGCGAGTTCGAAGACCACGAGACTCTCCGGTTGATACCAAACTGCAACCACGTGTTTCACCCGGAGTGTATCGACGCCTGGTTAGCTTCTCATGTGACTTGTCCCCTTTGTCGAGCAAATCTGAAACCAGATTCCGGCGACGTATCCATCGTAATGCCGACTGATCAGTTAAACGAAGGAAGTGAAGACAGTAGCAGGAGAGGAGTGAGGGAGACACGGCAAGCGCAGGCGCCTAACGATGTCGGTCCGAGCAGTAGCAACTCTTCAGGAACAGAGAGAGCAAACCACATGGACGAGGCCAGAGCTAAGCAAAGTAGAAATCGAAGATCGAGATGGAGAATGTTCGAGAAGCTACCGAGATCCAACTCCACGGGACATTCGCTGCTCGAACAGCCTCTGGCGACGTCGAACGACACGGAGAGGTATACGCTTAGGTTGCCGGAGGAGCTTCGGAGGTATATTCTGATGAATCATGCGGCCATCGGGCGGTCGGTGAGCTACCATGGGGTGACGCGGCCGATGAAAGGGATGGGTTGGAGTGACAGCGATGGAAGCAGCAGAGGGAAGAGGGACACGACGACGCCTCCAAGTGTTCATCGCAAGGATTAA 957 0.5465 MYVSGAVVPHSATSPSPLPPPPMPPGGVDFAIFVKATAAVCAVIFVTVFSVYLNYWTALMFASQNHTAGGLDGVSWRCSCSRGIDREVLDTFPILVYSTIKNHKIGKGELECAVCLSEFEDHETLRLIPNCNHVFHPECIDAWLASHVTCPLCRANLKPDSGDVSIVMPTDQLNEGSEDSSRRGVRETRQAQAPNDVGPSSSNSSGTERANHMDEARAKQSRNRRSRWRMFEKLPRSNSTGHSLLEQPLATSNDTERYTLRLPEELRRYILMNHAAIGRSVSYHGVTRPMKGMGWSDSDGSSRGKRDTTTPPSVHRKD 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4364g00024 318 MobiDBLite consensus disorder prediction 1 20 - -
Pral4364g00024 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 238 - -
Pral4364g00024 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 162 IPR013083 -
Pral4364g00024 318 SMART ring_2 112 153 IPR001841 -
Pral4364g00024 318 MobiDBLite consensus disorder prediction 193 209 - -
Pral4364g00024 318 MobiDBLite consensus disorder prediction 165 250 - -
Pral4364g00024 318 Pfam Ring finger domain 111 154 IPR001841 -
Pral4364g00024 318 MobiDBLite consensus disorder prediction 210 232 - -
Pral4364g00024 318 SUPERFAMILY RING/U-box 103 160 - -
Pral4364g00024 318 MobiDBLite consensus disorder prediction 236 250 - -
Pral4364g00024 318 MobiDBLite consensus disorder prediction 300 318 - -
Pral4364g00024 318 CDD RING-H2_EL5-like 111 154 - -
Pral4364g00024 318 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Pral4364g00024 318 MobiDBLite consensus disorder prediction 290 318 - -
Pral4364g00024 318 FunFam E3 ubiquitin-protein ligase ATL6 74 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4364g00024 Pral-Chr4364 120070 122570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4364g00024 1 273 Rapid Response to Elicitors AT3G05200 36.630 1.42e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4364g00024 K10664 - cave:132170952 194.512