Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4364g00020 ATGGCTCCGCCGCCGGTGGATCACAACGGCGAGTCCACGGCCGGTGACACCCAGAGATCTATCCCAACGCCGTTCCTTTCCAAAACGTATCAGCTCGTCGACGATCACATCATAGACGATGTGATTTCCTGGAACCAAGACGGATCTACTTTCATCGTTTGGAACCCTACCGAATTCGCCAGAGATTTGCTTCCTAAATATTTTAAGCACAACAACTTCTCCAGCTTTGTTCGCCAACTCAACACCTATGGATTCAGAAAGGTTGTGCCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCAGAGGCGAGAAACGACTTCTGTGCGAAATACAACGACGGAAGATTTCAACGCCTTCGACGCCGACAACGACGTCCCCGGCAGCGAAGGCCGGGACCACTGCGACTGTGGCGGTGCCGGGGCCGGTGCCGTTGACTTCTATACCGACGGCGATGCCGATCATCTCGCCATCAACCTCAGACGAGGAGCAGGTGATTTCGTCGAGTTCGCCGTCCTCGAAAGCTCCGGCCGAGCTCATGGACGAGAACGACAGGCTGCGAAAAGAGAACGTGCAGCTGTCGAAGGAATTAGCGGAGATGAGATCTCTCTGTAACAATATTTTCTCTCTATTATCTAACTACGCCAACAACCAAATCGATGGCGCTCTGCAAGGAAAAGACACCGTGAAACCGTTGGATTTAATGCCATCGAAACGGAACTCCGGGGAGGAGGAGCCGCCATCGGTGGAGGAGTTAAATCCGAAGCTGTTTGGGGTGGCGATTGGTGCGAAGAGAGCGAGGGAAGCGAGCGGGGGAGCGGAGGAGGAGGACACACTGCTAAGCTTGCATCAGCCGGGGCCAGCGGAGGTGAAATCTGAGCCGTTGGATTGTCAGAACCATCGAGAGAACCAGGAGACGCCGTGGTTCAATCATTGCGACAGAGCAAATAGTGTGTGTAATTAG 963 0.5389 MAPPPVDHNGESTAGDTQRSIPTPFLSKTYQLVDDHIIDDVISWNQDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTPSTPTTTSPAAKAGTTATVAVPGPVPLTSIPTAMPIISPSTSDEEQVISSSSPSSKAPAELMDENDRLRKENVQLSKELAEMRSLCNNIFSLLSNYANNQIDGALQGKDTVKPLDLMPSKRNSGEEEPPSVEELNPKLFGVAIGAKRAREASGGAEEEDTLLSLHQPGPAEVKSEPLDCQNHRENQETPWFNHCDRANSVCN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4364g00020 320 Gene3D - 17 115 IPR036388 -
Pral4364g00020 320 MobiDBLite consensus disorder prediction 1 22 - -
Pral4364g00020 320 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Pral4364g00020 320 FunFam Heat stress transcription factor B-4 17 115 - -
Pral4364g00020 320 Coils Coil 183 203 - -
Pral4364g00020 320 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4364g00020 320 MobiDBLite consensus disorder prediction 265 294 - -
Pral4364g00020 320 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4364g00020 320 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4364g00020 320 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4364g00020 320 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4364g00020 320 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4364g00020 320 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 258 IPR027725 -
Pral4364g00020 320 MobiDBLite consensus disorder prediction 158 176 - -
Pral4364g00020 320 MobiDBLite consensus disorder prediction 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4364g00020 Pral-Chr4364 97710 99462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4364g00020 1 320 HSF AT5G62020 48.235 1.86e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4364g00020 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4364g00020 K09419 - gmx:100812267 394.815