Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4364g00012 ATGGATGCGCATGTTGAGATGGGTCTTCTTGGGGAAAACTTCGATCCGAGTTTGATTGCGAGGATTAGGGATGATGGGTATGAGAGTCGTTCTGGAAGTGATAATTTCGATGGCGTATCAGGGGAGGATGATCAGGATGCTGCAGACGATACACCTCAGAGATCGAAGAAGTACCATAGACACACCCCTCACCAAATTCAAGAACTTGAAAATTTCTTCAAGGAGTGTCCTCATCCTGACGAAAAGCAAAGACTGGAACTTAGTAGGAGGCTTGGCTTGGAGACTAAGCAAGTCAAATTCTGGTTTCAAAATCGACGAACCCAAATGAAGACCCAACTGGAGCGTCATGAGAATCATTTTCTGAGGCAAGAAAATGACAAGCTCCGAGCTGAGAACAGTATGATGAAGGAAGCCATGGCCAACCCGGTATGCAACAACTGCGGAAGCCCAGCCATTCCTGGGCAAATCTCATTCGAAGAACACCAACTAAGGATTGAAAATGCTCGATTGAAGGACGAACTGAACCGCATATGTGCCTTGGCTAACAAGTTTCTGGGAAGGCCAATCTCAACCATGGCTCTTGCAACCCCAAATTCTGGTCTTGAGCTAGCCATTGGAAGGAGTAATAATACTATGAGCGGGATTGGTCTTGGGTCAAGCTTTCCGGTGGGATTTGATATGGGGATGACAATGCAAATGGGAAATGATCAAGCACAGGTTGAGAGATCCATGCTTATAGACCTTGCCTTGGCTGCTATGGAGGAATTGATGAAGATGGCTCAAGGGGACGCCCCTCTTTGGATTAAGACATTGGATGGCGGTAATGAAGTCCTGAATCTAGAGGAGTATGCTCGGATTTTTCCTCCTTGTCTTGGCCCGAAACCTCCTGGTTATGTCACTGAAGCTACTAGAGGCACTGGAGTAGTGACGATCAACAGTTTGGCTCTTGTTGAAACATTGATGGACATGAATCGATGGGTGGAGATGTTTCCGACCATGATTGCTAGAGCTTTGCCGCTCGATGTGATATCAAATGGCGTGGGAGGGACCAGAAGCAGTACTTTGCTCTTGTTGGAAGCTGAGCTGCAAATGCTTTCGCCGTTGGTGCCCGTTCGGCAGACGAGATTGCTGCGATTTTGCAAGCAGCAAACAGAAAATCTATGGGCTGTGGTTGATGTTTCAGTCGAGATTGGTCGTGACCCCACCAATGCACACCCTTTCGTCGCATGCAGGAGGCTTCCTTCTGGCTGCCTTGTGCAAGATATGCCCAACGGTTACTCCAAGGTTACTTGGGTAGAGCATTGGCAGTACGATGAGAATGTGGTGCACCATCTTTACCGTCCGATGGTGAACGCCGGCATTGGCTTCGGTGCTCCTAGATGGATCGCCGCCCTCCAAAGGCAATGCGAATGCTTGGCCATCCTCTTGTCCTCTTCCCTTCCTATTGATGATCACGCTACACTGAGCCAAGGTGGGCGGCGGAGTATGGTGAAGCTGGCACAACGTATGACGGACAACTTCTGTTCTGGGATAATCGCTTCCTCTGGCCTCAGGTGGGACAGCCTCCGTGTGGAGACGCTGGGAGATGACGTTAAGGTTATGACCCGCAAGAGCGAAGGCGAACCAGGCGATCCTCCCGGAGTCATGCTCAGCGCCGCCACTTCCATCTGGCTGCCGCTGTCGCAGCAGAGTTTGTTCGACTTCCTCCGGGATCAACGCCGGAGATTCGAGTGGGACATCTTGTCCAACGGCGCCGGTACCATGCAGGAAGTGGCTCTCATTGCGAAGGGACAGACACATGGTAACTGTGTTTCTCTACTACGGACCAACGGTGCTAATGGGAACGAGACCAGCATGGTGATGCTGCAAGAGACATGGACGGATGCTACAGGGTCTATGGTGGTTTATGCACCAGTTGATGTGCAGTCGCTGAACGTGGTGATGAGCGGCGGCGATTCTTCGTACGTGGCTCTCTTGCCTTCTGGCTTCGCCATTCATCCCGACGTCAGCCGCAACGGGAGTCCTCCGGGCGGTGACGGTGGCAGTGGCGGAAGCTTGCTTACGGTAGGGTTACAGATACTGGTGAACAGCCTGCCAACAGGGAAGCTGACGGTGGAGTCCATTGAAACGGTGAACAATCTAATGACGGCCACAGTTCAGAAGATCAAAGAGGCGCTCAGAGTTGCATGA 2190 0.5123 MDAHVEMGLLGENFDPSLIARIRDDGYESRSGSDNFDGVSGEDDQDAADDTPQRSKKYHRHTPHQIQELENFFKECPHPDEKQRLELSRRLGLETKQVKFWFQNRRTQMKTQLERHENHFLRQENDKLRAENSMMKEAMANPVCNNCGSPAIPGQISFEEHQLRIENARLKDELNRICALANKFLGRPISTMALATPNSGLELAIGRSNNTMSGIGLGSSFPVGFDMGMTMQMGNDQAQVERSMLIDLALAAMEELMKMAQGDAPLWIKTLDGGNEVLNLEEYARIFPPCLGPKPPGYVTEATRGTGVVTINSLALVETLMDMNRWVEMFPTMIARALPLDVISNGVGGTRSSTLLLLEAELQMLSPLVPVRQTRLLRFCKQQTENLWAVVDVSVEIGRDPTNAHPFVACRRLPSGCLVQDMPNGYSKVTWVEHWQYDENVVHHLYRPMVNAGIGFGAPRWIAALQRQCECLAILLSSSLPIDDHATLSQGGRRSMVKLAQRMTDNFCSGIIASSGLRWDSLRVETLGDDVKVMTRKSEGEPGDPPGVMLSAATSIWLPLSQQSLFDFLRDQRRRFEWDILSNGAGTMQEVALIAKGQTHGNCVSLLRTNGANGNETSMVMLQETWTDATGSMVVYAPVDVQSLNVVMSGGDSSYVALLPSGFAIHPDVSRNGSPPGGDGGSGGSLLTVGLQILVNSLPTGKLTVESIETVNNLMTATVQKIKEALRVA 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4364g00012 729 CDD homeodomain 56 112 IPR001356 GO:0003677
Pral4364g00012 729 MobiDBLite consensus disorder prediction 47 62 - -
Pral4364g00012 729 Coils Coil 118 141 - -
Pral4364g00012 729 SMART HOX_1 54 116 IPR001356 GO:0003677
Pral4364g00012 729 SUPERFAMILY Bet v1-like 492 718 - -
Pral4364g00012 729 SMART START_1 247 471 IPR002913 GO:0008289
Pral4364g00012 729 Gene3D - 248 471 IPR023393 -
Pral4364g00012 729 FunFam Homeobox-leucine zipper protein HDG1 41 128 - -
Pral4364g00012 729 Pfam START domain 248 471 IPR002913 GO:0008289
Pral4364g00012 729 CDD START_ArGLABRA2_like 242 470 - -
Pral4364g00012 729 MobiDBLite consensus disorder prediction 25 62 - -
Pral4364g00012 729 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Pral4364g00012 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 726 IPR042160 -
Pral4364g00012 729 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Pral4364g00012 729 ProSiteProfiles START domain profile. 238 474 IPR002913 GO:0008289
Pral4364g00012 729 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Pral4364g00012 729 SUPERFAMILY Homeodomain-like 37 112 IPR009057 -
Pral4364g00012 729 Gene3D - 41 128 - -
Pral4364g00012 729 SUPERFAMILY Bet v1-like 241 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4364g00012 Pral-Chr4364 47705 52649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4364g00012 23 726 Homeobox Transcription Factor Family AT3G61150 57.162 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4364g00012 START 6.6e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4364g00012 K09338 - gmx:100785102 1055.05