Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4361g00025 ATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCGCTTGATCAGGTAGAATTTGGTCGAAAGGGACGCAGACTTCGTGTGGAATGGACAAAACATGAACGCGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCAGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGACACATATCATACCAGAACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGACTCGTATGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATTTGCTGCAGAGAATGATGATGACAGGAGGAATGCATATAGTCCTGATAGAAGCCATGATCGATCACGTGATATAAGCAATGATAGAAAGCGATCACCCAGTCCTTATCGCCGAGAAAGAGGCAGCCCTGATTATGGCCATGGCTCTAGCCCATATAGGAGAGAGAAGAGCAGCCCTGATTATGGCCGTGGCTCTAGCCCATATAGGAGAGAGAAGAGCAGCCCTGATTATGGCCGTGGCTCTAGCCCATATAAGAGAGAGAAGAGCAGCCCTGACTATGGTCATAGCCACCGTAGAAGCTCCCAACAGATTGAGAGAGGTAGCCCAGATTATAATCACAGGAGCACTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTATTCGTGGCTCAAGCCATAGTCCTTATCATAAAGAACAAGGTAGAACTGACCGTGGCAATTCTCACTCCCGCAGTCCTAATGGAAGAGAGAGAGCCCCTCAAAATGATTGTTCCGACCGCAGTCCTTCCTATATGAAGAGGGTTAGCCCTGAAAATGGTCATGGCTCTATAAGTAGTCCTGATGCAAGAGGTGATGGTAGTCCTTACAATGGCGATGAAGATCACCTAAATTCCATGCCTGAGCCAAAGGACAATGCTAACCACGATGCTCCTGAAAGTCCCGTGAATGAAACATACGGCAGCCAATCTCCTGCTGCTGAAGAATGA 1074 0.459 MEDERDAEDAIRALDQVEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSYDDAIRALEATNMSKLLDRVITVEFAAENDDDRRNAYSPDRSHDRSRDISNDRKRSPSPYRRERGSPDYGHGSSPYRREKSSPDYGRGSSPYRREKSSPDYGRGSSPYKREKSSPDYGHSHRRSSQQIERGSPDYNHRSTSPYGRERDGSDPIRGSSHSPYHKEQGRTDRGNSHSRSPNGRERAPQNDCSDRSPSYMKRVSPENGHGSISSPDARGDGSPYNGDEDHLNSMPEPKDNANHDAPESPVNETYGSQSPAAEE 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4361g00025 357 MobiDBLite consensus disorder prediction 340 357 - -
Pral4361g00025 357 Gene3D - 40 138 IPR012677 -
Pral4361g00025 357 MobiDBLite consensus disorder prediction 129 357 - -
Pral4361g00025 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Pral4361g00025 357 MobiDBLite consensus disorder prediction 325 339 - -
Pral4361g00025 357 SUPERFAMILY RNA-binding domain, RBD 39 130 IPR035979 GO:0003676
Pral4361g00025 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Pral4361g00025 357 SMART rrm1_1 55 121 IPR000504 GO:0003723
Pral4361g00025 357 MobiDBLite consensus disorder prediction 275 291 - -
Pral4361g00025 357 MobiDBLite consensus disorder prediction 237 274 - -
Pral4361g00025 357 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 69 - -
Pral4361g00025 357 MobiDBLite consensus disorder prediction 129 225 - -
Pral4361g00025 357 SUPERFAMILY RNA-binding domain, RBD 1 49 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4361g00025 Pral-Chr4361 145883 148909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4361g00025 22 130 Eukaryotic Initiation Factors Gene Family AT3G16380 30.172 1.09e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4361g00025 K12893 - gmx:100796509 442.195