Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4361g00023 ATGAGGTCTATCTTTTGTGGAAACTTTGAATATGATGCTCGACAGTCTGATCTGGAGCGGCTGTTTAAAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCCGGGTTTGCCTTCGTCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCGCTTGATCAGGTAGAATTTGGTCGAAAGGGACGCAGACTTCGTGTGGAATGGACAAAACATGAACGCGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCAGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGACACATATCATACCAGAACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGACTCGTATGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATTTGCTGCAGAGAATGATGATGACAGGAGGAATGCATATAGTCCTGATAGAAGCCATGATCGATCACGTGATATAAGCAATGATAGAAAGCGATCACCCAGTCCTTATCGCCGAGAAAGAGGCAGCCCTGATTATGGCCATGGCTCTAGCCCATATAGGAGAGAGAAGAGCAGCCCTGATTATGGCCGTGGCTCTAGCCCATATAAGAGAGAGAAGAGCAGCCCTGACTATGGTCATAGCCACCGTAGAAGCTCCCAACAGATTGAGAGAGGTAGCCCAGATTATAATCACAGGAGCACTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTATTCGTGGCTCAAGCCATAGTCCTTATCATAAAGAACAAGGTAGAACTGACCGTGGCAATTCTCACTCCCGCAGTCCTAATGGAAGAGAGAGAGCCCCTCAAAATGATTGTTCCGACCGCAGTCCTTCCTATATGAAGAGGGTTAGCCCTGAAAATGGTCATGGCTCTATAAGTAGTCCTGATGCAAGAGGTGATGGTAGTCCTTACAATGGCGATGAAGATCACCTAAATTCCATGCCTGAGCCAAAGGACAATGCTAACCACGATGCTCCTGAAAGTCCCGTGAATGAAACATACGGCAGCCAATCTCCTGCTGCTGAAGAATGA 1149 0.4526 MRSIFCGNFEYDARQSDLERLFKRYGKVDRVDMKSGFAFVYMEDERDAEDAIRALDQVEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSYDDAIRALEATNMSKLLDRVITVEFAAENDDDRRNAYSPDRSHDRSRDISNDRKRSPSPYRRERGSPDYGHGSSPYRREKSSPDYGRGSSPYKREKSSPDYGHSHRRSSQQIERGSPDYNHRSTSPYGRERDGSDPIRGSSHSPYHKEQGRTDRGNSHSRSPNGRERAPQNDCSDRSPSYMKRVSPENGHGSISSPDARGDGSPYNGDEDHLNSMPEPKDNANHDAPESPVNETYGSQSPAAEE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4361g00023 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pral4361g00023 382 MobiDBLite consensus disorder prediction 170 250 - -
Pral4361g00023 382 MobiDBLite consensus disorder prediction 365 382 - -
Pral4361g00023 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Pral4361g00023 382 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pral4361g00023 382 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 320 - -
Pral4361g00023 382 MobiDBLite consensus disorder prediction 300 316 - -
Pral4361g00023 382 MobiDBLite consensus disorder prediction 262 299 - -
Pral4361g00023 382 MobiDBLite consensus disorder prediction 170 382 - -
Pral4361g00023 382 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Pral4361g00023 382 CDD RRM1_AtRSp31_like 2 73 - -
Pral4361g00023 382 Gene3D - 1 84 IPR012677 -
Pral4361g00023 382 Gene3D - 85 179 IPR012677 -
Pral4361g00023 382 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pral4361g00023 382 SUPERFAMILY RNA-binding domain, RBD 2 169 IPR035979 GO:0003676
Pral4361g00023 382 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pral4361g00023 382 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pral4361g00023 382 MobiDBLite consensus disorder prediction 350 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4361g00023 Pral-Chr4361 145089 148909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4361g00023 3 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 1.25e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4361g00023 K12893 - gmx:100781534 525.398