Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4361g00022 ATGAGGTCTATCTTTTGTGGAAACTTTGAATATGATGCTCGACAGTCTGATCTGGAGCGGCTGTTTAAAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCCGGGTTTGCCTTCGTCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCGCTTGATCAGGTAGAATTTGGTCGAAAGGGACGCAGACTTCGTGTGGAATGGACAAAACATGAACGCGGCATTAGAAGGCCTGGTAGTTCAAGAAGATCTTCAGCAAATTCAAGGCCATCAAAGACTTTATTTGTTATTAATTTTGACACATATCATACCAGAACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTTAGTGTGAGGATTAGAAGGAATTTTGCATTTGTCCAGTATGACTCGTATGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATCACAGTTGAATTTGCTGCAGAGAATGATGATGACAGGAGGAATGCATATAGTCCTGATAGAAGCCATGATCGATCACGTGATATAAGCAATGATAGAAAGCGATCACCCAGTCCTTATCGCCGAGAAAGAGGCAGCCCTGATTATGGCCATGGCTCTAGCCCATATAGGAGAGAGAAGAGCAGCCCTGATTATGGCCGTGGCTCTAGCCCATATAGGAGAGAGAAGAGCAGCCCTGATTATGGCCGTGGCTCTAGCCCATATAAGAGAGAGAAGAGCAGCCCTGACTATGGTCATAGCCACCGTAGAAGCTCCCAACAGATTGAGAGAGGTAGCCCAGATTATAATCACAGGAGCACTAGTCCATATGGAAGAGAGAGGGATGGTTCTGACCCTATTCGTGGCTCAAGCCATAGTCCTTATCATAAAGAACAAGGTAGAACTGACCGTGGCAATTCTCACTCCCGCAGTCCTAATGGAAGAGAGAGAGCCCCTCAAAATGATTGTTCCGACCGCAGTCCTTCCTATATGAAGAGGGTTAGCCCTGAAAATGGTCATGGCTCTATAAGTAGTCCTGATGCAAGAGGTGATGGTAGTCCTTACAATGGCGATGAAGATCACCTAAATTCCATGCCTGAGCCAAAGGACAATGCTAACCACGATGCTCCTGAAAGTCCCGTGAATGAAACATACGGCAGCCAATCTCCTGCTGCTGAAGAATGA 1197 0.4561 MRSIFCGNFEYDARQSDLERLFKRYGKVDRVDMKSGFAFVYMEDERDAEDAIRALDQVEFGRKGRRLRVEWTKHERGIRRPGSSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSYDDAIRALEATNMSKLLDRVITVEFAAENDDDRRNAYSPDRSHDRSRDISNDRKRSPSPYRRERGSPDYGHGSSPYRREKSSPDYGRGSSPYRREKSSPDYGRGSSPYKREKSSPDYGHSHRRSSQQIERGSPDYNHRSTSPYGRERDGSDPIRGSSHSPYHKEQGRTDRGNSHSRSPNGRERAPQNDCSDRSPSYMKRVSPENGHGSISSPDARGDGSPYNGDEDHLNSMPEPKDNANHDAPESPVNETYGSQSPAAEE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4361g00022 398 MobiDBLite consensus disorder prediction 170 398 - -
Pral4361g00022 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pral4361g00022 398 MobiDBLite consensus disorder prediction 381 398 - -
Pral4361g00022 398 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Pral4361g00022 398 MobiDBLite consensus disorder prediction 316 332 - -
Pral4361g00022 398 MobiDBLite consensus disorder prediction 278 315 - -
Pral4361g00022 398 CDD RRM1_AtRSp31_like 2 73 - -
Pral4361g00022 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pral4361g00022 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Pral4361g00022 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pral4361g00022 398 MobiDBLite consensus disorder prediction 170 266 - -
Pral4361g00022 398 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Pral4361g00022 398 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pral4361g00022 398 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pral4361g00022 398 MobiDBLite consensus disorder prediction 366 380 - -
Pral4361g00022 398 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 336 - -
Pral4361g00022 398 Gene3D - 85 179 IPR012677 -
Pral4361g00022 398 Gene3D - 1 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4361g00022 Pral-Chr4361 145089 148909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4361g00022 3 161 Eukaryotic Initiation Factors Gene Family AT4G34110 24.138 1.49e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4361g00022 K12893 - gmx:100796509 520.776