Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4361g00005 ATGGCGAGGGGGAAGGTTCAAATGAAAAGGATAGAGAATACAACCCGTCGTCAAGTAACATTTTCAAAGCGTAGAAACGGGCTTCTAAAGAAAGCCTATGAGCTATCTGTTCTTTGTGACGCCCAAGTGGCTGTGATCATCTTTTCACAAAGAGGCAGACTCTATGAGTTCTCAAGTTCTGACATCAGAAAGACGTTGGAACGGTACTTGAAATACACCAAAGGCGATCAAGTAGTGGCCGACAAGTTTGAAGATGAACAATGCAGCCAGCAAATGAAGCTTGAATCTGCAGTCATGGCCAAGAAGATTGAGCATCTTCAACTTTGTCAAAGGAAACTAATGGGACAAGAGTTGAGTTCATGTTCAATTGAAGAACTGCAAGAAATGGAGAATCAGCTTATCACAAGTTTGCAAAACGTGAGGCTTAGAAAAGTACTGCTATTGCAACAGCAAATTCAGCAACTACAGCACGAGGAAATAGAGTTGGTCCAAGAGAACGCCAGCTTAAGTAAATTGTGTGGAAGTGGAAGAACACAGTGCCAGCAGCAATGGGCTAAGCACAAAGAAGCAGAAGTGGAAACTGAATTATGTATTGGACTCCCACAAAATCGATGTTCGTAG 621 0.4251 MARGKVQMKRIENTTRRQVTFSKRRNGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSDIRKTLERYLKYTKGDQVVADKFEDEQCSQQMKLESAVMAKKIEHLQLCQRKLMGQELSSCSIEELQEMENQLITSLQNVRLRKVLLLQQQIQQLQHEEIELVQENASLSKLCGSGRTQCQQQWAKHKEAEVETELCIGLPQNRCS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4361g00005 206 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4361g00005 206 Coils Coil 145 165 - -
Pral4361g00005 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Pral4361g00005 206 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4361g00005 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4361g00005 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4361g00005 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4361g00005 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4361g00005 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4361g00005 206 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pral4361g00005 206 Coils Coil 123 143 - -
Pral4361g00005 206 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Pral4361g00005 206 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Pral4361g00005 206 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral4361g00005 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4361g00005 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4361g00005 Pral-Chr4361 30656 36120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4361g00005 1 204 MADS-box Gene Family AT5G51860 53.431 3.30e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4361g00005 K-box 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4361g00005 - - tcc:18605465 211.075