Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4361g00003 ATGGCGAGGGGGAAGGTTCAAATGAAAAGGATAGAGAATACAACCCGTCGTCAAGTAACATTTTCAAAGCGTAGAAACGGGCTTCTAAAGAAAGCCTATGAGCTATCTGTTCTTTGTGACGCCCAAGTGGCTGTGATCATCTTTTCACAAAGAGGCAGACTCTATGAGTTCTCAAGTTCTGAAAAGACGTTGGAACGGTACTTGAAATACACCAAAGGCGATCAAGTAGTGGCCGACAAGTTTGAAGATGAACAATGCAGCCAGCAAATGAAGCTTGAATCTGCAGTCATGGCCAAGAAGATTGAGCATCTTCAACTTTGTCAAAGGAAACTAATGGGACAAGAGTTGAGTTCATGTTCAATTGAAGAACTGCAAGAAATGGAGAATCAGCTTATCACAAGTTTGCAAAACGTGAGGCTTAGAAAAGTACTGCTATTGCAACAGCAAATTCAGCAACTACAGCACGAGGAAATAGAGTTGGTCCAAGAGAACGCCAGCTTAAGTAAATTGTGTGGAAGTGGAAGAACACAGTGCCAGCAGCAATGGGCTAAGCACAAAGAAGCAGAAGTGGAAACTGAATTATGTATTGGACTCCCACAAAATCGATGTTCGTAG 615 0.4244 MARGKVQMKRIENTTRRQVTFSKRRNGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSEKTLERYLKYTKGDQVVADKFEDEQCSQQMKLESAVMAKKIEHLQLCQRKLMGQELSSCSIEELQEMENQLITSLQNVRLRKVLLLQQQIQQLQHEEIELVQENASLSKLCGSGRTQCQQQWAKHKEAEVETELCIGLPQNRCS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4361g00003 204 Coils Coil 121 141 - -
Pral4361g00003 204 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Pral4361g00003 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pral4361g00003 204 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4361g00003 204 Coils Coil 143 163 - -
Pral4361g00003 204 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral4361g00003 204 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Pral4361g00003 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4361g00003 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4361g00003 204 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4361g00003 Pral-Chr4361 30656 36120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4361g00003 1 202 MADS-box Gene Family AT5G51860 51.961 6.79e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4361g00003 K-box 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4361g00003 - - tcc:18605465 203.371