LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4360g00003	ATGGCTTCATCTTCTTCCTCTGCTCCATCTTCTCAATCTTCCAAGAAATATGATGTTTTTATTAGTTTTAGAGGTGAGGACACCCGCTTGAATTTCACAAGCCATCTTTATCATGCTCTTTGTGGACAAAAAATATATGCATACATCGATGACAGCCTCGAGAAAGGAGATGAGGTATGGCCATCTCTTGAGAAAGCCATTAAAGATTCAACTCTGTTCCTTGTGGTGTTCTCAGAAAACTATGCATCTTCCACGTGGTGCTTGAAGGAGCTTGCAAAAATATTAGAGTGCTGCAGAAATCAACGTCACCTTCTTATACCTGTGTTCTATAGAGTAGATCCTTCAGATGTGAGGAAGCAACGTGGGAGTTACCACGAAGCATTTGAAGGACATGAGCGCAAAAGCAGCAACAACACGCAACAACTGCGCCAGTGGAGGGAGGCTCTCACTCATGCTGCCAATTTATCCGGTTGGCATTGTAGCCCCGATAGGAATGAAGCAGTGCTAATTGAAGAAATAGTGAATTGTATCATGAAAGAGTTGGACCGTAGGTATCAAAGTGAAGATCATCTAAAAGGCTTGATTGGAATTCACAAAAAAATGGCAGTTGTAGAATCAATGTTGGACAAAGGTTCAAAAAATGGTGGTTGCCAATTCATTGGAATTTGGGGGATGGGCGGTTTGGGCAAAACAACTCTTGTAAGAGCATTGTATGACAAGCAGCATTTTGAATACGAAGGGTCTTACTTTCTGGAAAAAGTGGGAGAAAAATTAAAAAAAGATGGAATAGATGCTTTAAGGAAGGAACTTGTTTGGAGTTTATTGGGGGGTAAAGCAATATATTCTCATATCATGACTAGGCTTCGTCGGACAAAGGTTTTCATTGTGCTTGATGATGTTGATAATGCTGAACAATTAGAAAATTTAGTTGGAAGATGTGAATTTGGATCAGGTAGCAAAGTCTTAATAACAAGCAGAGATAAGCAAGTGCTTCGTACGAAAGTGGATGATAATAATATATATGCGCTTCATGGTTTGGATCCTTATGAAGCTTTTCAACTTTTCTCCTTGAATGCCTTCAAAACAGGCTGCAGTGATCCGAAGATAAAAGAGCTAGCAGAAGAAGTGACTAAATATGCAGGTGGAAATCCATTGGCTCTAAAGGTTCTAGGCTCCATCTTGCGTGGCAAAAATCAAGAAGCATGGAAAAGCCAATTGGCAAAGCTTCAAAAATTGTTTTGTCCAGAAGTCATTGATATCCTCAGATTGAGTTTTGAAGGACTTGATAAGGAAGAGAAAAATATTTTCTTGCACGTCGCATGTTTTTTCAATTATTATTATGATGCTGAGGATGTAAAAAAATTGTTAGATACATGCAGTTATTCAACCGAGATTGGATTGACGATACTTGAGGAAAAAGCCCTTTTAGATATTGATAGAGGACGAATATGTATGCACAGTCTAATAAAACAAATGGGTAAACAAATTGTCCGTGAAGAATCATTAAATTATCCTACATGGTGCAACATATTTTGGATTTTCAAGGAAAGTTCTGATATATTGAAGAAAAAGATGGGACGTATTGAAGGCATGGTTATTAGCCTTTCAGAAGTTGAAGAGACTTTCTGTCAAAAATCTCATGCTATGGATTGGGTGGGATGCCCTTTAGAGTCCTTGCCAACGACATTTAAGGCTGAAAGTCTTGTTCGATTGGAAATGCCCTACAGCAGATTGACAAGACTTTGGGATGGAGTGCAGCCTGCATTGTTTAGGCTACAGTATTGCCAGTCCCTTACCAGCCTTACAAGCGATACCCCTCTCCAATCTCTCAGTCGGCTCGATGTAAGTTATTGCTCAAGTCTGGAGGAATTTTCAGTAACCTCAGAAAATGAAGAGCTCTGTTCACACCTTTCAGGAGCTGCCATCAGAGGTGCGTTGCGCTCATCAAGTGGGCATCGCAGCAAAATTCGTGACTTAGCTATAGCCAATTGCGGAAATGTGACAAGCGACCTTCGAGGTGTTGATGCTGGAGGCTGTAATGAGCTAGCGTCACCTCTCCTGTCCAAGTGTGATAAGATGGGTGCTTTGGAAAGACTAGGGCTTCCGTATTGCAATGAATTATCTGAACTTCCTAATGACATCAGGTTGCTGTCATCATTACGTCACTTACATCTCTCACAGACTAATGTACAGACCTTGCCTTCGAGCATCAAACATCTTTCACTCCTGCAACGTCTTGGCCTGGAGGGATGTAAAAGGCTTCGTTGTCTACCAGAGCTCCCTCCCTCTGTCTTGCAATTGTTTGCAATGGACTGCATATCCCTTGAGACCATACAATATTCACCTTTGACAAACGAAGGTGAAGAAGGAAAAGATAAGGCATGTCCACGCTTTTTATTCACAAATTGCAAGAAGCTGAATCGACGGGCAATCGAAGCTGCTGAGGCAAGAGTGCTACTTGCGATAAAGAAAGCCACTTATGACGATGCTATATTGGAATATCCAGGAAAAATAGTTCCAAAGTGGTTCAAGTTTAAGAGTACTGAAGAGGATCCCATGACTGTGAATCTCAGTTCGATTCCAAATTCTGAGGATGGGGGATTCCTTTTTTGCGTCGTCGTTTCTAAATTACCATCAGGGGGGGAGAAATTGATGCCGAATGGTTTATTGATGGTAAATATGCTTGCAGGGCCTCTAAAAGCCCGTTTTACTTGTATGGGCAGTCCTCAAAGCATGTTGGTCTTTGGTATGATCCTGATTCACTTGGAGAACTAA	2775	0.4112	MASSSSSAPSSQSSKKYDVFISFRGEDTRLNFTSHLYHALCGQKIYAYIDDSLEKGDEVWPSLEKAIKDSTLFLVVFSENYASSTWCLKELAKILECCRNQRHLLIPVFYRVDPSDVRKQRGSYHEAFEGHERKSSNNTQQLRQWREALTHAANLSGWHCSPDRNEAVLIEEIVNCIMKELDRRYQSEDHLKGLIGIHKKMAVVESMLDKGSKNGGCQFIGIWGMGGLGKTTLVRALYDKQHFEYEGSYFLEKVGEKLKKDGIDALRKELVWSLLGGKAIYSHIMTRLRRTKVFIVLDDVDNAEQLENLVGRCEFGSGSKVLITSRDKQVLRTKVDDNNIYALHGLDPYEAFQLFSLNAFKTGCSDPKIKELAEEVTKYAGGNPLALKVLGSILRGKNQEAWKSQLAKLQKLFCPEVIDILRLSFEGLDKEEKNIFLHVACFFNYYYDAEDVKKLLDTCSYSTEIGLTILEEKALLDIDRGRICMHSLIKQMGKQIVREESLNYPTWCNIFWIFKESSDILKKKMGRIEGMVISLSEVEETFCQKSHAMDWVGCPLESLPTTFKAESLVRLEMPYSRLTRLWDGVQPALFRLQYCQSLTSLTSDTPLQSLSRLDVSYCSSLEEFSVTSENEELCSHLSGAAIRGALRSSSGHRSKIRDLAIANCGNVTSDLRGVDAGGCNELASPLLSKCDKMGALERLGLPYCNELSELPNDIRLLSSLRHLHLSQTNVQTLPSSIKHLSLLQRLGLEGCKRLRCLPELPPSVLQLFAMDCISLETIQYSPLTNEGEEGKDKACPRFLFTNCKKLNRRAIEAAEARVLLAIKKATYDDAILEYPGKIVPKWFKFKSTEEDPMTVNLSSIPNSEDGGFLFCVVVSKLPSGGEKLMPNGLLMVNMLAGPLKARFTCMGSPQSMLVFGMILIHLEN	924

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4360g00003	924	Pfam	NB-ARC domain	204	411	IPR002182	GO:0043531
	Pral4360g00003	924	SMART	till_3	16	155	IPR000157	GO:0007165
	Pral4360g00003	924	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	438	IPR027417	-
	Pral4360g00003	924	SUPERFAMILY	L domain-like	533	780	-	-
	Pral4360g00003	924	Gene3D	-	346	429	IPR042197	-
	Pral4360g00003	924	Gene3D	-	10	182	IPR035897	-
	Pral4360g00003	924	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	776	IPR044974	GO:0006952
	Pral4360g00003	924	FunFam	Disease resistance protein (TIR-NBS-LRR class)	13	183	-	-
	Pral4360g00003	924	SUPERFAMILY	"Winged helix" DNA-binding domain	416	501	IPR036390	-
	Pral4360g00003	924	Pfam	Leucine Rich Repeat	568	586	IPR011713	-
	Pral4360g00003	924	Gene3D	Ribonuclease Inhibitor	519	784	IPR032675	-
	Pral4360g00003	924	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	158	IPR035897	-
	Pral4360g00003	924	PRINTS	Disease resistance protein signature	380	394	-	-
	Pral4360g00003	924	PRINTS	Disease resistance protein signature	219	234	-	-
	Pral4360g00003	924	PRINTS	Disease resistance protein signature	287	301	-	-
	Pral4360g00003	924	PRINTS	Disease resistance protein signature	605	621	-	-
	Pral4360g00003	924	ProSiteProfiles	TIR domain profile.	15	181	IPR000157	GO:0007165
	Pral4360g00003	924	Gene3D	-	183	338	IPR027417	-
	Pral4360g00003	924	Pfam	TIR domain	16	196	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4360g00003	Pral-Chr4360	46146	50217	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4360g00003	9	776	WRKY Transcription Factor Family	AT4G12020	27.624	1.48e-65	239

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4360g00003	-		-	pcin:129290874	770