Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4359g00022 ATGATTAAGGGTTTGATGTTTCACCAGCAACAGCAACAAGTAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCTGGTGAGGCCAGTGTTTCCTCAGGCAATAGAAATGAAATTGGTGCCAATTATCCTCCACAACAATACTTTGCTTCACCACCAACTCAAACGACTCAGCCCGTCAAGAAAAAGAGAAACCTTCCTGGCAATCCAGACCCAGATGCTGAAGTTATAGCCTTGTCTCCCAAGAGTCTTCTGGCAACAAACAGGTTCATCTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTTCAACTTCATAGAAGAGGGCACAATCTGCCGTGGAAGCTGAAGCAGAGAGCAAACAAAGAGGTGAGGAAGAAGGTGTATGTATGCCCAGAAACCACATGTGTGCACCATGAGCCAGCAAGGGCACTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGATAAATGTTCCAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACACACAGGGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCAAATCCACTTCTTCATTCCCAACCACCCAGTGCTTCATCATCAGCATCTCACATACTGAATCTCCAAACCCAACTCAATAATGATCCCCAAGGTCTCCATTCTTTACAACTAAAGAAAGAGCATCAGCAAAGCTTCAACCTCCGGCCAGAAATGCCCCCTTGGCTAGCCTGCCCTCCTCCTCCAGCTCCTGGTCCATCCACCATTGATCTCTCTTCCCCATCATCATCTTCAATCTTCTCCACAAGATTCGACCAGGACTTTTCACGAACATCTCACGGGCAAGATCTGAGCAGTATCCATGAAAACCCTAACCCTACTAGCCTTGGCCCCACCCTCCCTCCTGCCTACCAACCAGCGCCTTCCCCGCACATGTCAGCAACAGCCTTGTTGCAGAAAGCAGCACAAATTGGTGCAACCATGACCAAAACTGGCTCCTCCAATACCACCCCAGCCGTGATTAGGACCCACCATCACACTCGCGTGCCTCTTCCTGCTTCTGACTCTTCTGCTGCTGCCACCAATTCAATCTCAAGCAGTGGTAATTTTGGTTTGAATTTGGCATCACGTGAATCTGCAGTACTACTCTCTCCTTCAGCTTCTTCTGCTACTGCTAGTACTGTGCCTGCTGCTGCTTCTTCCTCAGGTGTTCCTCCTCCTTCTTCCCCCTTTCTTCTTCATGATGTTATGAGTTCTTTCTCTGGTACTTCTGGCGGTGCCGGGTTTGAAGGAACGTCTTTTGAGGATGCTTTTGGTGGGATTTGGAACTCCAAGAATAATAAAGACGGGAACTTTCTTGATACCCTTACAAAGACAACCACCCCCGCCGGACATCTTAGTGGAGCCGGCGATGACGGTGGTGGAAATGAAGGTTTGACGAGAGATTTCTTGGGTCTTAGACCCCTCTCTCATAATGAGATTCTCAGCTTTGCTGGAATTGGAAACTACATGAACCCGACCTCCCATGATCAGCAGAAACAATCCCAGAAACCATGGCAAGGTTAG 1677 0.477 MIKGLMFHQQQQQVVVEENMSNLTSASGEASVSSGNRNEIGANYPPQQYFASPPTQTTQPVKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEVRKKVYVCPETTCVHHEPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSNPLLHSQPPSASSSASHILNLQTQLNNDPQGLHSLQLKKEHQQSFNLRPEMPPWLACPPPPAPGPSTIDLSSPSSSSIFSTRFDQDFSRTSHGQDLSSIHENPNPTSLGPTLPPAYQPAPSPHMSATALLQKAAQIGATMTKTGSSNTTPAVIRTHHHTRVPLPASDSSAAATNSISSSGNFGLNLASRESAVLLSPSASSATASTVPAAASSSGVPPPSSPFLLHDVMSSFSGTSGGAGFEGTSFEDAFGGIWNSKNNKDGNFLDTLTKTTTPAGHLSGAGDDGGGNEGLTRDFLGLRPLSHNEILSFAGIGNYMNPTSHDQQKQSQKPWQG 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4359g00022 558 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Pral4359g00022 558 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Pral4359g00022 558 Gene3D Classic Zinc Finger 72 142 - -
Pral4359g00022 558 MobiDBLite consensus disorder prediction 312 331 - -
Pral4359g00022 558 FunFam protein indeterminate-domain 12-like 70 138 - -
Pral4359g00022 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Pral4359g00022 558 Gene3D Classic Zinc Finger 143 224 - -
Pral4359g00022 558 SMART c2h2final6 91 113 IPR013087 -
Pral4359g00022 558 SMART c2h2final6 167 187 IPR013087 -
Pral4359g00022 558 SMART c2h2final6 132 162 IPR013087 -
Pral4359g00022 558 MobiDBLite consensus disorder prediction 312 335 - -
Pral4359g00022 558 MobiDBLite consensus disorder prediction 26 64 - -
Pral4359g00022 558 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 543 IPR031140 -
Pral4359g00022 558 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Pral4359g00022 558 MobiDBLite consensus disorder prediction 26 73 - -
Pral4359g00022 558 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4359g00022 Pral-Chr4359 160078 163343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4359g00022 1 368 IDZ Gene Family AT1G55110 57.180 6.95e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4359g00022 zf-C2H2_jaz 8.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4359g00022 K25870 - qsa:O6P43_027636 641.728