Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4359g00004 ATGAGTCGCTACGACAGTCGCTCTGGGGACCCTACTTCTTACCGTGACCGGAGAAGTGATTCGGGGCTGGGTGCTCCCACAGGTTACGGTGGTTCTGTCCACTCTTCCTCAAGCAGGAGGGATTACAATGACGGTGGATCCCCAAGGAAATTGAATTTGGATGGCCTGCCTCATTTTGAGAAGAATTTCTACATTGAGTCACCAGAGGTGAGGGCTATGACTGAGGCTGAAGTTAATGATTATCGGCAGAAGAGGGACATAACTGTTGAAGGTCGAGATGTCCCCAGACCAGTCAAAAGCTTTCACCTTGCTGGTTTCCCGGAGTATGTTCTGCAAGAAATTACAAAAGCTGGTTTTGTTGAACCTACACCTATTCAATCTCAAGGATGGCCAATGGCTTTGAAGGGGCGTGATCTCATAGGAATAGCAGAAACTGGATCAGGGAAGACGCTTGCTTATTTATTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCTAGAACCTGGAGATGGTCCAATTGTGTTAGTTTTGGCTCCAACTCGAGAACTTGCTGTCCAAATACAGCAAGAGGCTACTAAGTTTGGTGCATCATCTAGAATTAAGAGTACCTGCATATATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGCTGATTGACATGATTGAGTCAAATCATACAAACTTACGAAGAGTTACATACCTTGTATTGGATGAGGCTGATAGGATGTTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCCCAGATTCGTCCAGACCGTCAAACGTTATGCTGGAGTGCTACCTGGCCGAAGGAGGTTGAGCAGCTGGCGAGGCAGTCCCTTTATAACCCATATAAAGTGATTATAGGTTCTCCAGATTTAAAAGCCAACCATGCAATACGTCAATATGTTGACATTGTTTCTGAAAAGCAGAAATACGACAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACTCGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATACATGGAGATAAAAGTCAGGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCTGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGCTTAGATGTGAAGGACGTGATGTATGTAATAAATTATGACTTCCCGGGATCTCTAGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGCGCAAAGGGAACTGCATATACATTCTTTACTGCTGCAAATGCTAGATTTGCAAAGGAACTTATAGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGCACGTGGAGCACCTCCTCCTCCTTCAGGTTATGGAGGTTTCCGTGGCAGAAGTTATGGCAGTCGCCCACTGAGATGA 1509 0.4632 MSRYDSRSGDPTSYRDRRSDSGLGAPTGYGGSVHSSSSRRDYNDGGSPRKLNLDGLPHFEKNFYIESPEVRAMTEAEVNDYRQKRDITVEGRDVPRPVKSFHLAGFPEYVLQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRSYGSRPLR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4359g00004 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Pral4359g00004 502 MobiDBLite consensus disorder prediction 1 17 - -
Pral4359g00004 502 MobiDBLite consensus disorder prediction 1 54 - -
Pral4359g00004 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 80 478 - -
Pral4359g00004 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Pral4359g00004 502 Gene3D - 309 480 IPR027417 -
Pral4359g00004 502 MobiDBLite consensus disorder prediction 476 502 - -
Pral4359g00004 502 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
Pral4359g00004 502 SMART ultradead3 118 321 IPR014001 -
Pral4359g00004 502 FunFam ATP-dependent RNA helicase RhlB 309 481 - -
Pral4359g00004 502 CDD SF2_C_DEAD 318 448 - -
Pral4359g00004 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Pral4359g00004 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Pral4359g00004 502 SMART helicmild6 358 439 IPR001650 -
Pral4359g00004 502 CDD DEADc_DDX5_DDX17 110 305 - -
Pral4359g00004 502 Gene3D - 62 308 IPR027417 -
Pral4359g00004 502 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Pral4359g00004 502 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Pral4359g00004 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4359g00004 Pral-Chr4359 24340 29260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4359g00004 87 459 Eukaryotic Initiation Factors Gene Family AT3G19760 34.225 9.36e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4359g00004 K12823 - gmx:100790464 902.894