Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4358g00008 ATGGCCAACGTAGCGAGTTCAAAAGGGGATTTCTCATGGATTTGTCTCAAAGATTTCACTTCCTTCTGCACTCAGAGGAGCATCATTGACGCTATGAATATACTATTTGTCTGTGCTTTTTACATATCTTTTCTTAGCAGTTTGATCAGAAAAAAGTACGCAAATGACTTCCACAGAAAGGGATGGGTTTCTTTAGCTGCCTCAGTCTATTGTGCCCTTATAAGCATTGCATATTTTAGTAACGGAGTGTGGAATCTTATAGCCAAACCTGAAGATCTTAGGAAGTTGGGGTGGTTGGTTTATTTTTTCCGTGGACTAGTGTGGATTTCTTTAACAATCTCCTTGCTTGTTCAGAGATCAAAATGTATTAAAATTCTAAACTCTGTTTGGTGGGCTTCTTCATGCATACTTGTTTCAGCTCTCAATATTGAGATTCTGTACAAAGAGCATAAAATTCAAACATTTGATATGGTTAAATGGCCAGCACAGTTTCTACTCATTTTCTGTGCATTCAGAAGCCTTTATTTTATTCCTCAGAGAATCCAAAATCCCACTGTTTCAGAGCCTCTTTTAGGTCAAAATCAAAAGGCTGAAAACAAAAAAATAAAAATTTCTCATGCCACTTTTCTCAGAAAATTGACTTTCTCTTGGATTAATCCCTTACTGAGTTTGGGCTACTCCAAGCCACTAGCTCTTGAAGATATCCCATCTCTTGTTTCTGAAGACGAAGCTGCTTTAGCCTATAAAATTTTTTCTCATGCATGGAATTCCTCTTTAAGAGATAGAAGCAAAAATAGTAATACCAAGAACTTGATTATTTGGTGTATATCAAGAGTTTACCTGAAAGAGAACTTTCTTATAGCAATCTGGGCATTGCCCAGGACAATTGCTGTAGTAGTTTCTCCTTTATTACTTTATGCTTTTGTGAACTATTCAAATAGTAAAGAGGAAGATCTAAAAGAGGGTCTTGCCATACTGGGTTGCCTGTTTATCTGTAAGGTCATTGAATCTTTGCCTCAAAGACACTGGCATTTTCACTCAAGAAGGTTGGGAATGAGAATGAGATCAGCTCTAATGGTGGCAGTCTATGACAAGCAGTTGAAGCTTTCAAGTGCAGCCAGAAGAAGACACTCAACAGGGGAAATAGTAAATTACATAGCAGTTGATGCTTATAGAATGGGAGAATTTCCATGGTGGTTTCATAGCACATGGACTTATTCATTACAACTTTTTCTAGGCATTGGGATCCTATTTGGTATTGTCGGCATTGGTGCTCTTCCAGGTCTAGCCCCTCTTGTCATATGTAGCCTTCTTGATATACCCTTTGCAAATATTCTTCGAAAATGTCAGTCAGCATTTATGGTTGCCCAAGATGAACGTCTAAGGTCAACTTCAGAGATGCTAAATAATATGAAAATCATAAAGTTGCAATCTTGGGAGGAAAAGTTCAGGACTTTGGTTGAAACCCTTCGTGCGAAAGAATTCAAATTTCTGTCTAAGGCACAATTTTTGAAAGCTTACGGGGCGGCGACCTATTGGATTTCTCCTACCATTGTTTCATCTGTGATCTTCCTAGGATGTTCTGTTTTCCAGAGTGCCCCCTTGAATGCAGGAACCATTTTCACGGTTCTTGCAACTTTGAGGAGCATGGGTGAACCTATTAGAATGATCCCAGAGGCTATTTCTGTGCTGATCCAAGTTAAGGTCTCTTTTGATCGTCTCAACACGTTTTTGCTTGATGAAGAACTAGAAGATGGAGATATTGGAAGGAATTCAACGCAAAGCCCAGTTAATGGTGTGGAAATTCAAGGTGGAAACTTCAGTTGGGATCTGGAGTCAATGTCTCCAACTTTGACAAATTTGAATGTAGAAATCAAACGGGGGGAGAAAATTGCAGTGTGTGGACCAGTTGGAGCTGGAAAATCATCCCTCATACATGCAGTGCTTGGCGAGATACCCAAAATTTCAGGAACTGTTAAAGTGGGTGGAAACCTAGCCTATGTTTCTCAAACATCTTGGATTCAAAGCGGAACAATACGCGATAACATACTCTTCAGCAAGCCAATGGAAAAAACCAGATATGAGAATGCCATCAAAGTTTGCGCCTTGGATAAAGATATCAACGCTTTTAGCCACGGTGACCTTACAGAAATTGGTCAGCGAGGGATCAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTCGAGCAGTATACAATGATGCTGATATTTACCTCTTAGATGATCCTTTCAGTGCAGTAGATGCGCATACTGCTGCTATTCTGTTCAATGATTGTGTCATGACTGCTCTAAGGGAGAAAACTGTCATTCTAGTGACTCATCAGGTGGAGTTTCTTGCACAAGTTGATAAAATCTTGGTAATGGAGGGGGGAATAGTTACACAATCAGGATGTTATGAAGACCTTATGATAGAAGGGACAACTTTTAAACAGCTTGTAAATGCCTATAGAGAAGGAATAGCAGGGTCTGATAAAAACACTGAAATTCCAAAAGAATCTGAAGGAGCAGTTGGTGTTAATCAGCCACTGGAACCTCATGACTTTCATGTCACTATGGATCATATTTGCGAGGAGAACATTTCTACAGAAGTTCAAATTGGGGTACAACTTACACAAGAAGAAGAAAAAGAGATTGGTGATGTTGGCTTGAAGCCATTCTGGGATTATCTTTGTCTCTCTAAAGGATTAATGCTTATGGGTTTGAGCATTTTAGCACAGTTGACTTTTATTGCTCTGCAGTCAACATCAATCTTTTGGCTTGCTCTAGCCATTGAATTCCCAAATGTAACAAATGTCATCTTGATTGGAGTTTACACAATAGTTTCACTTCTAGGTGTTGTCTTTGCGTGCTCAAGGTCTATCATCAGTGCTTATCTTGGATTAAAAGCTTCTACATCTTTCTTCTCTAGTTTCACTAATGCTATCTTCAAAGCTCCTATGCTCTTCTTTGACTCAACCCCAGTAGGGAGGATTACGACCCGTGTTTCATCAGATTTGAGTATTTTAGACTTCGATATACCTCATGCCTTGGACCTTGTGACCGCTGGTGGAACTGAACTCCTGGCAACAATCGGGATAATGGCTTCAGTCACGTGGCAAGTACTTATTGTTGCAGTTCCTGCCTTAATAGCTTCTAAATACTTGCAGGGCTATTATCAAGCCTCTTCAAGGGAACTAATGAGGATAAATGGAACCACAAAAGCTCCAATTATGAATTTCTCAGCTGAGACATCACTCGGAGTTGTGACTATGAGAGCTTTCAACATGATAGACAGATTTTACCAAAATTACCTCAAACTTGTGGACACAGATGCAAAGCTATTCTTTCATTCTGCTGGGTCCTTGGAGTGGTTACTTTTGAGGATTGAAGCACTTCAAAATTTTACACTCTTCACAGCAGCTTTACTGCTTGTTCTTCTTCCAAAGGGATATTTGTCTCCCGGCCTTGCAGGACTCTCTCTATCATATGCCTTGACATTGACAGGAACCCAAATTTTTATGACTCGTTGGCTTTGCAACTTATCTAATCATATTGTTTCCGTTGAAAGAATTAATCAGTTCATTCACATACCAGAAGAGCCTCCTGCAATTGTGGAGTCCAGAAAGCCTCCACTGTCGTGGCCTTCCAAGGGTAGGATTGAGCTTCAAAATCTTGAGATAAGGTATCGTCCAAATGCTCCATTAGTTCTTAAGGGAATTACCTGTACGTTTAAAGAAGCGAATAGAGTGGGAATTGTAGGGAGGACTGGAAGTGGAAAAAGTACACTTGTAAGTGCTTTGTTTCGCTTGGTTGATCCTGCAAGAGGTGATATTCTTATCGATGGGATCAGCATATTCCCAATGGGGTTGAAGGATTTGAGGATGAAGCTGAGCATTATTCCTCAAGAACCCACTTTTAGGGGTAGCATTAGAACCAACTTGGATCCTCTTGGCCTCTACTCTGACAATGAAATCTGGGAGGCTTTAGAGAAATGCCAGCTCAAGTCAACAATCAGCAGGCTTCCAAATCTATTGGACTCTTCTGTAAATGATGATGGTGAAAACTGGAGTGTGGGACAACGTCAGCTCTTATGCCTAGGAAGAGTTCTTCTGAAGCGAAATAAGATTCTTGTTCTTGATGAAGCCACTGCTTCCATTGATTCTACCACAGACGTCATCCTTCAACGAGTTATCAAACAAGAATTTGCAGGGTGCACAGTTATAACCATAGCTCATCGAGTTCCAACCGTAATAGATAGCGATATGGTTATGGTCCTCTCTTATGGGAAAGTGGTGGAATATGATGAGCCTTCAAAGCTTATAGAGACAAACTCTTCTTTCTCCAAACTTGTTGCTGAGTATTGGTACAGCCGCAATAAGAACTCCCCCAAATTTGTAATTGATATTAATATATAG 4419 0.401 MANVASSKGDFSWICLKDFTSFCTQRSIIDAMNILFVCAFYISFLSSLIRKKYANDFHRKGWVSLAASVYCALISIAYFSNGVWNLIAKPEDLRKLGWLVYFFRGLVWISLTISLLVQRSKCIKILNSVWWASSCILVSALNIEILYKEHKIQTFDMVKWPAQFLLIFCAFRSLYFIPQRIQNPTVSEPLLGQNQKAENKKIKISHATFLRKLTFSWINPLLSLGYSKPLALEDIPSLVSEDEAALAYKIFSHAWNSSLRDRSKNSNTKNLIIWCISRVYLKENFLIAIWALPRTIAVVVSPLLLYAFVNYSNSKEEDLKEGLAILGCLFICKVIESLPQRHWHFHSRRLGMRMRSALMVAVYDKQLKLSSAARRRHSTGEIVNYIAVDAYRMGEFPWWFHSTWTYSLQLFLGIGILFGIVGIGALPGLAPLVICSLLDIPFANILRKCQSAFMVAQDERLRSTSEMLNNMKIIKLQSWEEKFRTLVETLRAKEFKFLSKAQFLKAYGAATYWISPTIVSSVIFLGCSVFQSAPLNAGTIFTVLATLRSMGEPIRMIPEAISVLIQVKVSFDRLNTFLLDEELEDGDIGRNSTQSPVNGVEIQGGNFSWDLESMSPTLTNLNVEIKRGEKIAVCGPVGAGKSSLIHAVLGEIPKISGTVKVGGNLAYVSQTSWIQSGTIRDNILFSKPMEKTRYENAIKVCALDKDINAFSHGDLTEIGQRGINLSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALREKTVILVTHQVEFLAQVDKILVMEGGIVTQSGCYEDLMIEGTTFKQLVNAYREGIAGSDKNTEIPKESEGAVGVNQPLEPHDFHVTMDHICEENISTEVQIGVQLTQEEEKEIGDVGLKPFWDYLCLSKGLMLMGLSILAQLTFIALQSTSIFWLALAIEFPNVTNVILIGVYTIVSLLGVVFACSRSIISAYLGLKASTSFFSSFTNAIFKAPMLFFDSTPVGRITTRVSSDLSILDFDIPHALDLVTAGGTELLATIGIMASVTWQVLIVAVPALIASKYLQGYYQASSRELMRINGTTKAPIMNFSAETSLGVVTMRAFNMIDRFYQNYLKLVDTDAKLFFHSAGSLEWLLLRIEALQNFTLFTAALLLVLLPKGYLSPGLAGLSLSYALTLTGTQIFMTRWLCNLSNHIVSVERINQFIHIPEEPPAIVESRKPPLSWPSKGRIELQNLEIRYRPNAPLVLKGITCTFKEANRVGIVGRTGSGKSTLVSALFRLVDPARGDILIDGISIFPMGLKDLRMKLSIIPQEPTXFRGSIRTNLDPLGLYSDNEIWEALEKCQLKSTISRLPNLLDSSVNDDGENWSVGQRQLLCLGRVLLKRNKILVLDEATASIDSTTDVILQRVIKQEFAGCTVITIAHRVPTVIDSDMVMVLSYGKVVEYDEPSKLIETNSSFSKLVAEYWYSRNKNSPKFVIDINI 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4358g00008 1473 Gene3D - 580 842 IPR027417 -
Pral4358g00008 1473 Gene3D ABC transporter type 1, transmembrane domain 873 1202 IPR036640 GO:0005524|GO:0016020
Pral4358g00008 1473 SMART AAA_5 627 801 IPR003593 GO:0016887
Pral4358g00008 1473 SMART AAA_5 1247 1440 IPR003593 GO:0016887
Pral4358g00008 1473 CDD ABCC_MRP_domain1 600 799 - -
Pral4358g00008 1473 Gene3D ABC transporter type 1, transmembrane domain 273 579 IPR036640 GO:0005524|GO:0016020
Pral4358g00008 1473 Gene3D - 1204 1455 IPR027417 -
Pral4358g00008 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1221 1455 IPR003439 GO:0005524
Pral4358g00008 1473 FunFam ABC transporter C family member 3 1204 1455 - -
Pral4358g00008 1473 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 602 823 IPR003439 GO:0005524
Pral4358g00008 1473 CDD ABC_6TM_ABCC_D1 286 574 IPR044746 GO:0140359
Pral4358g00008 1473 FunFam Multidrug resistance protein associated1 579 843 - -
Pral4358g00008 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1211 1454 IPR027417 -
Pral4358g00008 1473 Pfam ABC transporter transmembrane region 909 1171 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00008 1473 Pfam ABC transporter transmembrane region 308 546 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00008 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 566 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00008 1473 FunFam ABC transporter C family member 5 871 1202 - -
Pral4358g00008 1473 Pfam ABC transporter 618 752 IPR003439 GO:0005524
Pral4358g00008 1473 FunFam ABC transporter C family member 10 268 582 - -
Pral4358g00008 1473 CDD ABC_6TM_ABCC_D2 903 1196 IPR044726 GO:0140359
Pral4358g00008 1473 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 205 1457 - -
Pral4358g00008 1473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 823 IPR027417 -
Pral4358g00008 1473 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 909 1184 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00008 1473 Pfam ABC transporter 1238 1386 IPR003439 GO:0005524
Pral4358g00008 1473 SUPERFAMILY ABC transporter transmembrane region 274 580 IPR036640 GO:0005524|GO:0016020
Pral4358g00008 1473 SUPERFAMILY ABC transporter transmembrane region 892 1203 IPR036640 GO:0005524|GO:0016020
Pral4358g00008 1473 CDD ABCC_MRP_domain2 1219 1439 - -
Pral4358g00008 1473 ProSitePatterns ABC transporters family signature. 725 739 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4358g00008 Pral-Chr4358 101523 108055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4358g00008 600 845 Calmodulin-binding Proteins AT2G36910 25.940 6.36e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4358g00008 - - qsa:O6P43_018290 2057.34