Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4358g00007 ATGGCCAACTTAGCAGGTCCAACAGGGGGTTTCTCATGGATAAGTCTCAGAGATTTTGATTTCACTTCCTTTTGCACTCAAAGGAGCATCATAGACACCGTGAATCTTCTCTTTCTCTGTGCCTTTTACATATCCTTGCTTTGCAATTTTATCAGAAAAAACAATGCAAGTGACAGCCACAGAAAAGGATGGAGATCTAAATGTTTACAAGTTCTAAACCTTGTTTGGTGGGCCTCTTCATGCACACTTGTTTCAGCTCTCAATATTGAGGTTCTGTTCAAAGGGCATAACATTCAAATACTTGATATGGTTCAATGGCCTGTGCATTTTTCACTTGTTTTCTGTGCCTTCCGAAGCCTCTATTTTGCACCTCAAAGCAGTCAAAATAATACTATGTCACAGCCTCTTTTATCTCAAAAGGATGAAAATAAAGAATCAAAACTTGCACGTGCCAATTTCCTCAGCAAATTGACTTTCTCGTGGATTAATTCCTTACTGAAATTGGGCTATTCAAAGCCATTGGATCTGCAAGACATCCCGTCTCTTGTGTCTGAAGATGAAGCTTCTTTAGCCTACCAAAATTTTTCTCATGTATGGGATTCCCTTTTGAGGGATAGAAGCAAAAACAACAGTACTAAAAACTTGGTTATGTGGTCCATATTAAGAGTTTACATGAAAGAGAACTTTCTCATAGGAATCCTGGCATTGCTTAGGACAATTTCTGTGGTAGTTTCTCCTTTGGTGCTCTATGCTTTTGTTAACTATGCAAATAGTGAAGAGGAAAATCTAAAAGAGGGTCTTGCCATACTGGGTTGTCTGATTATATGCAAGGTCACTGAGTCAGGAATGAGAATGAGATCAGCTCTAATGGTGGCAATATATAACAAGCAGTTGAAGCTTTCAAATGCAGCCAGAAGAAGACACTCAACTGGGGAGATTGTGAATTACATAGGAGTTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCACACTACATGGACTTCAGTAGTACAGCTTCTTCTATCTATTGGGGTTCTATTTGGTGTTGTTGGTCTTGGTGCTCTTCCTGGTTTAGTCCCCATTTTGATCTGTGGGTTTCTTAACATGCCCATTGCAAAGATCATCCAAAGGTGTCTGTCAGAATTTATGGTTGCACAGGATGAACGTCTAAGGTCAACTTCAGAGATCTTAAATAATATGAAAATCATAAAGTTGCAATCTTGGGAGGAGAAGTTCAAGACCTCGGTAGAAACCCTACGGTCCAAAGAGTTCAAGTGGCTGGCTAAGGCTCAGTTCATAAAAGCTCATGGATCATTTATCTATTGGATGTCTCCATTGATTGTTTCCTCTGTAATCTTCCTTGGATGCGCTCTTTTGGAAAGTGCCCCTTTAAATGCTGGAACCATATTCACTATTCTTGCTACTTTGAGGAGCATGGGTGATCCTGTTAGAATTATTCCAGAGGCTCTTTCTGTTATAATCCAAGTTATGGTCTCGTTCGATCGTCTCAATGCCTTTTTGCTTGATGATGAGCTTAGTGATGATGTCACTGGAAGAAACTTAATGCAAAATTCAGTTAATAGCGTGGAAATGCAAGCAGGTAACTTCAGTTGGGATTTGGAGTCGATGTATCCAACTTTGAGAGATTTGAATGTAAAAATCGAATGGGGACAGAAAATTGCAATTTGTGGACCAATTGGAGCTGGAAAATCATCCTTCATATATGCAATACTTGGCGAGATACCCAAAATTTCAGGAACTGTTAAGGTGGGTGGAAGTATAGCCTATGTTTCTCAAAAATCTTGGATCCAAAGTGGGACAGTTCGCCATAATATACTCTTCGGCAAACCGATGGATGAAACCAGATATGAGAATGCCATAAAAGTATGTGCCTTGGATAAGGATATCAATGCCTTTAGCCACGGTGATCTTACAGAAATAGGTCAGCGAGGGACCAACTTGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTCGTGCGGTATATAATGATGCTGATGTTTATCTATTAGACGACCCTTTCAGTGCAGTGGATGCGCATACTGCTGCTATTCTATTCAATGATTGTGTCTTGAATGCTCTGAAGAAGAAAACTGTAATTCTAGTGACTCATCAAGTGGAGTTTCTCTCACAAGTTGATAAAATTCTCGTCATGGAGGGTGGAGTAGTTACTCAATCAGGATGTTATGAAGATCTTCTGACAGAAGGGACAGCCCTTGAACAACTTGTAAATGCCCATAGAGAAGCAATATCAGGGGCAGATCAAAACAATGAGATCCCAGGGGAGTTTGAAGATGTGATAAATGTTCTTCAGCCATTGGAGTCTCATGGATTTCATCTCCCTGAAGATCATAAGACTGAGCAGGTTTCAATGAAAGGTCAACACGGATTACAACTTACACAGGAAGAAGAAAAGGAGATTGGTGATGTTGGCTGGAAGCCATTTTGGGATTATATTTATCTCTCCAATGGATCATTGCTTCTGGGTTTGATCATTGTAGCACAGGTGGCTTTTATTGGTTTACAAGCAGCATCAACTTTTTGGCTTGCTCTAGCCACTGAAGTGCCAAAAGTAACTAATGGCATCTTGATTGGGGTTTACGCAATAGTTTCACTTATAAGCGTTAGTTTTGTGTGCATAAGATCTATCATGTGTGCACATCTTGGATTAAAAGCTTCTGCTTCTTTCTTCTCTAGTTTCAATAATGCTATCTTCAAGGCCCCTATGCTCTTTTTTGACTCAACCCCAGTAGGAAGAATTTTGACCCGAGCTTCATCAGATTTGAGTATATTGGACTTCGATTTACCTTATGCACTCACCTTTGTAGCAGCTGGGGCAATAGAACTTCTGACAATAATTGGGATAATTGTTTCAGTCACGTGGCAAGTACTTATTGTTGCAGTTCCCGCCTTGATAGCCTCTAAATACATTCAGGGCTATTATCAAGCCTCTTCTAGGGAACTAATGAGAATCAATGGAACAACCAAAGCTCCGGTTATGAATTTCACCGACGAGACATCATTAGGAGTGGTGACTGTGAGAGCTTTCAACATGGCAAACAGATTTTTCCAAAATTACCTCAAGCTTGTGGACACAGATGCAAAACTATTCTTTCATTCTATTGTGGCCGCAGAATGGTTGATTTTAAGGATTGAAGTACTTCAGAATTTGACACTATTCACAGCAGCTTTATTGCTAGTTCTACTTCCAAAGGGGCTTGTACCCCCAGGCCTTGCAGGACTTTCTCTATCATATGCTTTGTCATTGACAGGATGCCAAATTTTTCTTAGTACTTGGTTCTGCAATTTATCAAATTATGTTGTTTCCGTTGAAAGAATTAAACAGTTTATTCACATACCAGAAGAGCCTCCTGAAATTGTGGAGGACAGAAAACCTCCACTTTCATGGCCCTCCAAGGGTAGGATTGAGCTCCAAAATCTTGAGATAAGGTATCGCCCAAATGCTCCATTAGTCCTTAAGGGAATTACCTGTACGTTTACAGAAGGGAGTAGAGTGGGAATTGTAGGGAGGACTGGAAGTGGGAAAAGTACACTTGTAAGTGCTTTGTTTCGCTTGGTTGATCCTGCAAGAGGTGATATTCGTATAGATGGGATCAGGATATTACCAATGGGTTTGAAGGATTTGAGAATGAAGCTGAGCATTATTCCTCAAGAACCCACTCTTTTTAAGGGTAGCATTAGAACCAACTTGGATCCTCTAGGCCTCTACTCTGACGATGAAATATGGAAGGCTTTAGAGAAATGCCAGCTCAAGGCAACAGTCATCAATCTACCCAATCTACTGGACTCTTCTGTGAGTGATGAAGGAGAAAATTGGAGTTTGGGACAGCGCCAACTTTTTTGTCTTGGAAGAGTACTTCTCAAGCGAAATAGAATTCTTGTTCTTGATGAGGCCACTGCCTCCATTGATTCTGCCACTGATACCATTTTGCAACGAGTTATCAGACAAGAGTTTGCAGGATGCACAGTTATAACTGTGGCTCACAGAGTTCCAACTGTTATAGACAGTGATATGATTATGGTTCTCTCTTATGGGAAAGTGATGGAATATGATGAGCCTTCAAAGCTAATGGAGACAAACTCTTCTTTCTCTAAACTTGTTGCTGAGTATTGGTTCAGCTGCAGCAAGAACTTCTCCCAAATCCCAAATCATTAA 4203 0.4042 MANLAGPTGGFSWISLRDFDFTSFCTQRSIIDTVNLLFLCAFYISLLCNFIRKNNASDSHRKGWRSKCLQVLNLVWWASSCTLVSALNIEVLFKGHNIQILDMVQWPVHFSLVFCAFRSLYFAPQSSQNNTMSQPLLSQKDENKESKLARANFLSKLTFSWINSLLKLGYSKPLDLQDIPSLVSEDEASLAYQNFSHVWDSLLRDRSKNNSTKNLVMWSILRVYMKENFLIGILALLRTISVVVSPLVLYAFVNYANSEEENLKEGLAILGCLIICKVTESGMRMRSALMVAIYNKQLKLSNAARRRHSTGEIVNYIGVDAYRMGEFPWWFHTTWTSVVQLLLSIGVLFGVVGLGALPGLVPILICGFLNMPIAKIIQRCLSEFMVAQDERLRSTSEILNNMKIIKLQSWEEKFKTSVETLRSKEFKWLAKAQFIKAHGSFIYWMSPLIVSSVIFLGCALLESAPLNAGTIFTILATLRSMGDPVRIIPEALSVIIQVMVSFDRLNAFLLDDELSDDVTGRNLMQNSVNSVEMQAGNFSWDLESMYPTLRDLNVKIEWGQKIAICGPIGAGKSSFIYAILGEIPKISGTVKVGGSIAYVSQKSWIQSGTVRHNILFGKPMDETRYENAIKVCALDKDINAFSHGDLTEIGQRGTNLSGGQKQRIQLARAVYNDADVYLLDDPFSAVDAHTAAILFNDCVLNALKKKTVILVTHQVEFLSQVDKILVMEGGVVTQSGCYEDLLTEGTALEQLVNAHREAISGADQNNEIPGEFEDVINVLQPLESHGFHLPEDHKTEQVSMKGQHGLQLTQEEEKEIGDVGWKPFWDYIYLSNGSLLLGLIIVAQVAFIGLQAASTFWLALATEVPKVTNGILIGVYAIVSLISVSFVCIRSIMCAHLGLKASASFFSSFNNAIFKAPMLFFDSTPVGRILTRASSDLSILDFDLPYALTFVAAGAIELLTIIGIIVSVTWQVLIVAVPALIASKYIQGYYQASSRELMRINGTTKAPVMNFTDETSLGVVTVRAFNMANRFFQNYLKLVDTDAKLFFHSIVAAEWLILRIEVLQNLTLFTAALLLVLLPKGLVPPGLAGLSLSYALSLTGCQIFLSTWFCNLSNYVVSVERIKQFIHIPEEPPEIVEDRKPPLSWPSKGRIELQNLEIRYRPNAPLVLKGITCTFTEGSRVGIVGRTGSGKSTLVSALFRLVDPARGDIRIDGIRILPMGLKDLRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCQLKATVINLPNLLDSSVSDEGENWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDTILQRVIRQEFAGCTVITVAHRVPTVIDSDMIMVLSYGKVMEYDEPSKLMETNSSFSKLVAEYWFSCSKNFSQIPNH 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4358g00007 1400 FunFam ABC transporter C family member 10 212 513 - -
Pral4358g00007 1400 Gene3D - 1135 1385 IPR027417 -
Pral4358g00007 1400 Gene3D - 512 770 IPR027417 -
Pral4358g00007 1400 FunFam Multidrug resistance protein associated1 510 773 - -
Pral4358g00007 1400 Gene3D ABC transporter type 1, transmembrane domain 216 511 IPR036640 GO:0005524|GO:0016020
Pral4358g00007 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 533 754 IPR003439 GO:0005524
Pral4358g00007 1400 Pfam ABC transporter 549 683 IPR003439 GO:0005524
Pral4358g00007 1400 FunFam ABC transporter C family member 5 800 1132 - -
Pral4358g00007 1400 CDD ABCC_MRP_domain1 531 730 - -
Pral4358g00007 1400 Pfam ABC transporter 1168 1316 IPR003439 GO:0005524
Pral4358g00007 1400 ProSitePatterns ABC transporters family signature. 656 670 IPR017871 GO:0005524|GO:0016887
Pral4358g00007 1400 SUPERFAMILY ABC transporter transmembrane region 824 1133 IPR036640 GO:0005524|GO:0016020
Pral4358g00007 1400 CDD ABCC_MRP_domain2 1149 1369 - -
Pral4358g00007 1400 CDD ABC_6TM_ABCC_D1 230 505 IPR044746 GO:0140359
Pral4358g00007 1400 CDD ABC_6TM_ABCC_D2 840 1126 IPR044726 GO:0140359
Pral4358g00007 1400 Pfam ABC transporter transmembrane region 281 477 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00007 1400 Pfam ABC transporter transmembrane region 870 1095 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00007 1400 SUPERFAMILY ABC transporter transmembrane region 217 511 IPR036640 GO:0005524|GO:0016020
Pral4358g00007 1400 FunFam ABC transporter C family member 3 1134 1385 - -
Pral4358g00007 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 753 IPR027417 -
Pral4358g00007 1400 Gene3D ABC transporter type 1, transmembrane domain 800 1132 IPR036640 GO:0005524|GO:0016020
Pral4358g00007 1400 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 282 497 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4358g00007 1400 SMART AAA_5 558 731 IPR003593 GO:0016887
Pral4358g00007 1400 SMART AAA_5 1177 1368 IPR003593 GO:0016887
Pral4358g00007 1400 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 149 1383 - -
Pral4358g00007 1400 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1151 1385 IPR003439 GO:0005524
Pral4358g00007 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1141 1384 IPR027417 -
Pral4358g00007 1400 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 839 1114 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4358g00007 Pral-Chr4358 77358 83914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4358g00007 531 777 Calmodulin-binding Proteins AT2G36910 26.966 2.95e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4358g00007 - - qsa:O6P43_018290 1932.15