Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4354g00001 ATGTGCAGTTCTGGCACCAGCCACTCTTACGCAAGGATCACCTCATTAAACTTGAGCACGAGCAAGTTAACAGGACACATAAGTATTTCATTCTCAGAACTTACGGAGTTAGAGTCCCTGGATTTGTCAGATAATAACTTATCAGGAACAATACCAGAATTTCTAGCTAAATTGCCGAAGTTGAAAGTCCTTAATTTGAGAGGCAACGAGCTTACTGGTTCAATTCCGAATATTCTGAAGGAGAAGTCAGATTTGGAAATGAGTTTGGATGGTAACCCTGATCTTTGCTTGACGGCTCGATGCAAAAAACATAAGTTCGCTATTCCCCTGATACCCTCTGTCTCTGCTTTGATCGTTGTAATCTTGGTTTTGCTTGGAATATGGATCTTTAGGATAAGAAGACTGAAAGGGAATTTTACTAGGCATGAATCATCAAAATTAAGAAGTAAAGCATTTTCTTACTCTAACGTTCTTGAGATCACTAATAACTCACAGAACTTAATTGGAGAAGGAGGATTTGGAAAGGTTTATTTAGGCACTCTTAAGAATGATACTCAAGTTGCAGTAAAATTACTTTCTCAATCATCAGTGCAAGGTCATAGAGAATTTCGATCAGAGGTAGAACTCTTGATGGTTGTTCATCATAGACACTTGGTCTCTCTGATTGGGTATTGCAAAGAAACTGGTGCAAGGGCATTAATTTATGAGTATATGGCTAATGGTGACCTCCGTCAACACTTGTCGGGTAACAACAGGCATGCTTTGAAATGGAAGAACAGGCTTCAAATTGCACTAGATGCAGCACGTGGATTAGAATATTTGCATGATGGTTGTAAGCCAGCAATAGTACATAGAGACTTGAAGACTACTAACATTTTGTTAGATGAAAATATGGAAGCTAAGATTGCTGATTTTGGATTGTCTAGAGCATTTGCAAATGATATCGATAGCCATGTCTCAACTCGTCCAGCTGGGACAATTGGTTATCTTGATCCCGAGTTTCAAAGTTCTGGCAACCTTACAAAAGGAAGTGATATTTATAGTTTTGGAATAATTCTGCTAGAGCTAATCACTGGACAACCAGCAGCGAAAAGGCAACCAAACAATACCTTCACTTTCCTGCTTCAATGGGTTACCCCTAAAGTTAAAAACGAGAATATCAAGTCCATTATTGACTCAAGGGTCCAAGGAAAATATAGTGTTGATTCGGCTGGGAAATTCCTACAGGTAGCCATGTCATGCACTGCACCAACTGCAAGTCAAAGGCCTGATATAAGTCAAGTAGTTTATGAACTAAGGGGATGTTTGGAATTGGAGATGAGCAAGGAAGTGACCAGCGACCAACCCACCAATTCAAGCAGTTCCATGAGTACGAGTGCTTTGCAATTTGATTCAGACTTCAGTATATTGTCTGGAAGATAG 1422 0.3959 MCSSGTSHSYARITSLNLSTSKLTGHISISFSELTELESLDLSDNNLSGTIPEFLAKLPKLKVLNLRGNELTGSIPNILKEKSDLEMSLDGNPDLCLTARCKKHKFAIPLIPSVSALIVVILVLLGIWIFRIRRLKGNFTRHESSKLRSKAFSYSNVLEITNNSQNLIGEGGFGKVYLGTLKNDTQVAVKLLSQSSVQGHREFRSEVELLMVVHHRHLVSLIGYCKETGARALIYEYMANGDLRQHLSGNNRHALKWKNRLQIALDAARGLEYLHDGCKPAIVHRDLKTTNILLDENMEAKIADFGLSRAFANDIDSHVSTRPAGTIGYLDPEFQSSGNLTKGSDIYSFGIILLELITGQPAAKRQPNNTFTFLLQWVTPKVKNENIKSIIDSRVQGKYSVDSAGKFLQVAMSCTAPTASQRPDISQVVYELRGCLELEMSKEVTSDQPTNSSSSMSTSALQFDSDFSILSGR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4354g00001 473 Pfam Protein tyrosine and serine/threonine kinase 165 432 IPR001245 GO:0004672|GO:0006468
Pral4354g00001 473 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Pral4354g00001 473 FunFam Leucine-rich repeat receptor-like protein kinase 140 237 - -
Pral4354g00001 473 CDD STKc_IRAK 168 432 - -
Pral4354g00001 473 Pfam Leucine rich repeat 12 71 IPR001611 GO:0005515
Pral4354g00001 473 ProSiteProfiles Protein kinase domain profile. 162 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4354g00001 473 Gene3D Ribonuclease Inhibitor 5 106 IPR032675 -
Pral4354g00001 473 PRINTS Leucine-rich repeat signature 58 71 - -
Pral4354g00001 473 PRINTS Leucine-rich repeat signature 37 50 - -
Pral4354g00001 473 FunFam Leucine-rich repeat receptor-like kinase 1 98 - -
Pral4354g00001 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
Pral4354g00001 473 SMART serkin_6 162 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4354g00001 473 ProSiteProfiles Leucine-rich repeat profile. 36 59 IPR001611 GO:0005515
Pral4354g00001 473 SUPERFAMILY L domain-like 10 97 - -
Pral4354g00001 473 SUPERFAMILY Protein kinase-like (PK-like) 147 432 IPR011009 -
Pral4354g00001 473 Gene3D Phosphorylase Kinase; domain 1 137 237 - -
Pral4354g00001 473 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 238 445 - -
Pral4354g00001 473 ProSiteProfiles Leucine-rich repeat profile. 60 82 IPR001611 GO:0005515
Pral4354g00001 473 PANTHER OS07G0107800 PROTEIN-RELATED 2 440 - -
Pral4354g00001 473 Gene3D Transferase(Phosphotransferase) domain 1 238 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4354g00001 Pral-Chr4354 1496 5169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4354g00001 4 458 Receptor kinase-like Gene Family AT2G19230 46.795 8.23e-136 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Pral4354g00001 PK_Tyr_Ser-Thr 1.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4354g00001 - - pcin:129289896 627.476