Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4350g00113 ATGTTAATGGAAGTACCGGAGTGTTTTGTCGGTGGCTATTTCTCAGCCGGAGGAGATCAATTCTCCCCGGACAAGCGCCATGGTGCTGACCAGAAGGCCGGTGAGCCCTTCGCCATTGACGACCTCCTTGACCTCTCCAACGCGGATGCTATGATCATGTCCGACGGTTTCTTCGATAATGCCGCCGGCAACTCCACTGACTCATCCACTGTCACCGCCGTTGACAGCTGTAATTCTTCCGTCTCCGGTGGTGACAATCATTTCTCCTCCGGTTACGCTGGCTCCCGCGGCTTCGGCGATCCTCAATTATCTGGAGAACTCTTCGTTCCGCAGGATGACGACTTGGCTGAACTGGAGTGGCTATCGAACTTCGTGGAAGACTCGTTTTCTGTCGAAGATGAGCTAAAAACACTCCACCTCCTCTCCGGAACCACTGCTTCCGCCATCGGCACGAAACCTCAGACACCAGATTCCTCCTCTTCCTCCGAAACAATTCCACCATTCGCTGCGGACACCGATCGAAACGCACCGCTCTTCCATCCAGAAACTCCGCTTCCAGGTAAAGCTCGGAGCAAGCGTACACGTGCTGCCCCCGGGGATTGGTCTACCCGCCTCCTCCACCTGATCACCCCGACGGTGGTTTCAGAACCGGCGCAAGCGAAGGCGGTGGCAACTAAGAAAAGGGAGAGTTCGAATTCGGAGTCCTCTTCGGGTCGGAGATGCCTGCATTGCGCTGCCGACAAGACTCCACAGTGGCGGACCGGACCAATGGGTCCGAAGACGCTGTGCAATGCTTGTGGAGTGCGGTACAAGTCCGGGAGGCTGGTGCCAGAGTACCGACCTGCGGCGAGCCCGACGTTCGTGTCATCAAAGCACTCCAATTCGCATAGGAAGGTGATGGAGATGAGGAGGCAGAAGGAAATGCAGAGGCAGCAACAGCACCAATTGGTTAGCCAGAGCTCAATTTTCGGCGTTTCTCATGGGGGAGATGAGTTCTTGATCCCTCATCCCACTGGTCCAGATTATAGGCACATGATCTAG 1041 0.5572 MLMEVPECFVGGYFSAGGDQFSPDKRHGADQKAGEPFAIDDLLDLSNADAMIMSDGFFDNAAGNSTDSSTVTAVDSCNSSVSGGDNHFSSGYAGSRGFGDPQLSGELFVPQDDDLAELEWLSNFVEDSFSVEDELKTLHLLSGTTASAIGTKPQTPDSSSSSETIPPFAADTDRNAPLFHPETPLPGKARSKRTRAAPGDWSTRLLHLITPTVVSEPAQAKAVATKKRESSNSESSSGRRCLHCAADKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVSSKHSNSHRKVMEMRRQKEMQRQQQHQLVSQSSIFGVSHGGDEFLIPHPTGPDYRHMI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4350g00113 346 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Pral4350g00113 346 PIRSF Txn_fac_GATA_plant 22 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral4350g00113 346 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Pral4350g00113 346 MobiDBLite consensus disorder prediction 225 239 - -
Pral4350g00113 346 PANTHER GATA TRANSCRIPTION FACTOR 33 313 - -
Pral4350g00113 346 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Pral4350g00113 346 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Pral4350g00113 346 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 299 - -
Pral4350g00113 346 MobiDBLite consensus disorder prediction 217 239 - -
Pral4350g00113 346 MobiDBLite consensus disorder prediction 147 202 - -
Pral4350g00113 346 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Pral4350g00113 346 Gene3D - 235 320 IPR013088 GO:0006355|GO:0008270
Pral4350g00113 346 MobiDBLite consensus disorder prediction 147 168 - -
Pral4350g00113 346 FunFam GATA transcription factor 230 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4350g00113 Pral-Chr4350 678897 680610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4350g00113 33 346 C2C2-Gata Transcription Factor Family AT4G32890 46.605 3.67e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral4350g00113 GATA 8.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4350g00113 - - gmx:100776605 460.685