Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4350g00090 ATGTCCAACGATCATCAATACTACTCTCTCTCCCCTGCTCTCTCCCTCAGCCTTGCGGGAATCTTTCGCCGTGATGAGGTGGTGGCGCCGTCGAGGAACGCTGACACGGAAGACGCCGGGGAGGAGGGCAGCGGAGGCGGGCGCCAAGACAACACTACTACTGTTCATGAGATTAGCAGCGAGAATTCTGGGCTGATCGGGAGATCGTCGAGATCGGAAGACGATGGCGGCTTCGACGTCGAAGAAGGCGAGCATGAAGGCGGCGACGATGTTGAAGGTGACGACGACGGAGAGAAGAACAGGAACAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGAGCAGATCAGAGAAATGGAAATACTTTTCAGAGAGTCACCACATCCTGATGAGAAGCAGAGACAACAACTTAGCAAGCAACTAGGCCTTGCTCCCAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCTATACAAGAGCGTCATGAGAATTTTTTGCTAAAGTCAGAAATGGATAAACTTAGAGAGGAAAATGAGGCCTTGAGAGGGATCATAAACAAAGCTTGTTGTCCCAATTGTGGCGTCGCTACCATTTCCTCAGATGCTTCCATGCTCCCTGAAGAACACCAACTGCGCGTAGAAAATGCCAAACTCAAAGCTGAGATCGAGAAGCTTCGAACAGCATTAGCGAAGGGCCCACCGGGTTCGACAACTTCCCCTTCGAGCTCTTTGGGAAATGAGCAAATGGAGAACAGAAACTGTTTAGAAATTTACAGTGGAATTTTCGGACTCGACAAGACAAGGATAATGGAGCTGCTTAACCAAGCAATGGAAGAGCTTATAAAGATGGCCACTACGAAGGAACCACTATGGGTTCGCAGCGTTGAGACTAGTCGCCAGATACTTAATTACGACGAATATGTCAAACAGTTCCAAGTTGAATACATTGGAAGACCTTCCTCTTCTAATAATAAGAGATGCTCCATTGAAGCCTCAAGAGAAACTGGGGTTGTTTTTCTGGATCTCCCTCGTCTTCTTCAAATCTTCTTGGACGTGAATCAATGGAAGGAAATGTTTCCTTCCTTAATATCAAAGGCAGCCATTGTTGATGTTATTTGCAGTGGTGAAGGTCCTAACCAGGATGGTGCGGTGCAACTGATGTTTAGCGAGCTGCAGATGCTGACACCGATGGTGGCGAGCAGGGAAGTATACTTTATGAGGTACTGCAAGCAATTAAAGGAAGAAGAGTGGGCAATCGTCGACGTATCCATAGACAAAGTACAAGACAGCATCGAATCTTCTCTGCTCAAATGCAGAAAACGCCCTTCTGGTTGCATCATTCAGGATACTTGCAATGGCCACTGCAGGGTAACATGGGTGGAGCACATAGAATGCGAGAAGAGCACGGTTCATACAATGTACCGGAGCATCGTGAACAGCGGGCTGGCGTTCGGGGCGAGGCGGTGGCTGGCGACTTTACAGGTGCAATGCCAGCGGCTGGTGTTCTTGATGGCCACGAATGTGCCGATGAAGGACTGTGTGGGAGTTGGGACGATGGCCGGAAGGAAGAGCGTGATGAAGTTGGCGCAGAGAATGACGAGGAGTTTGTGCCATGCCGTGGCGGCTTCCAGCCTGCACACATGGACCAAGGTGAGTGGTGAGAATGGAGAAGACATAAGGGTCAGTTCCAGAAAGAACTTGAACGAGCGCGGAGAGCCCCTTGGGGTGATATTGTGTGTTGTTTCTTGCTCCTGGCTTCCAGTCTCACCTAATGTTCTCGTTCATTTCTTGGGGGACGAAACCCGACGTACTCAGTGGCATGTGAGAAGTGGCGGTGAGCACGTGCAGTCCATCGTAAACTTGGCCAAAGGAAAAGATCGATGCAATGCAGTCAACATCCTGGCAGTAAAATCAAAAGACGACAGTAGTAACAGTACGTGGATTCTGCAAGACAGCAGCACGAGTACGTACGAATCAACGGTGGTGTATGCTCCGGTGGACATCACTCGCATGCAGTCAGTGATCGCAGGCTGCGACTCCGGCGACGTCGCGATTCTGCCGTCAGGATTCTGCGTCGTCCCCGACGGACTGGAGGCCATAAGGCCATTGGTGATTACTTCTTCATCAAAGCATCATGGAGCAGAAGAAGAAGAAGAAGAGAAGAGCTCAGAAGCAGGGTCTCTGCTTACCATGGCATTCCAGGTCCTCGTCAGCACTTCGCCTGCTGCTAAGCTAACACAAGAGTCTGTTGAATCAGCCACTTCTGTCATGTCTTGTACTTTGAGAAATATCAGAACCAGTTTACAGTGTGAGGATAGTTAG 2340 0.4953 MSNDHQYYSLSPALSLSLAGIFRRDEVVAPSRNADTEDAGEEGSGGGRQDNTTTVHEISSENSGLIGRSSRSEDDGGFDVEEGEHEGGDDVEGDDDGEKNRNKKKKRKKYHRHTAEQIREMEILFRESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENFLLKSEMDKLREENEALRGIINKACCPNCGVATISSDASMLPEEHQLRVENAKLKAEIEKLRTALAKGPPGSTTSPSSSLGNEQMENRNCLEIYSGIFGLDKTRIMELLNQAMEELIKMATTKEPLWVRSVETSRQILNYDEYVKQFQVEYIGRPSSSNNKRCSIEASRETGVVFLDLPRLLQIFLDVNQWKEMFPSLISKAAIVDVICSGEGPNQDGAVQLMFSELQMLTPMVASREVYFMRYCKQLKEEEWAIVDVSIDKVQDSIESSLLKCRKRPSGCIIQDTCNGHCRVTWVEHIECEKSTVHTMYRSIVNSGLAFGARRWLATLQVQCQRLVFLMATNVPMKDCVGVGTMAGRKSVMKLAQRMTRSLCHAVAASSLHTWTKVSGENGEDIRVSSRKNLNERGEPLGVILCVVSCSWLPVSPNVLVHFLGDETRRTQWHVRSGGEHVQSIVNLAKGKDRCNAVNILAVKSKDDSSNSTWILQDSSTSTYESTVVYAPVDITRMQSVIAGCDSGDVAILPSGFCVVPDGLEAIRPLVITSSSKHHGAEEEEEEKSSEAGSLLTMAFQVLVSTSPAAKLTQESVESATSVMSCTLRNIRTSLQCEDS 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4350g00090 779 Pfam START domain 278 505 IPR002913 GO:0008289
Pral4350g00090 779 SMART HOX_1 106 168 IPR001356 GO:0003677
Pral4350g00090 779 Coils Coil 214 234 - -
Pral4350g00090 779 FunFam Homeobox-leucine zipper protein HDG1 92 180 - -
Pral4350g00090 779 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Pral4350g00090 779 SMART START_1 277 505 IPR002913 GO:0008289
Pral4350g00090 779 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Pral4350g00090 779 CDD START_ArGLABRA2_like 272 504 - -
Pral4350g00090 779 CDD homeodomain 111 162 IPR001356 GO:0003677
Pral4350g00090 779 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 105 774 IPR042160 -
Pral4350g00090 779 ProSiteProfiles START domain profile. 268 508 IPR002913 GO:0008289
Pral4350g00090 779 MobiDBLite consensus disorder prediction 46 69 - -
Pral4350g00090 779 Pfam Homeodomain 107 162 IPR001356 GO:0003677
Pral4350g00090 779 MobiDBLite consensus disorder prediction 28 114 - -
Pral4350g00090 779 SUPERFAMILY Bet v1-like 270 505 - -
Pral4350g00090 779 Gene3D - 276 504 IPR023393 -
Pral4350g00090 779 MobiDBLite consensus disorder prediction 79 93 - -
Pral4350g00090 779 MobiDBLite consensus disorder prediction 28 44 - -
Pral4350g00090 779 SUPERFAMILY Bet v1-like 527 740 - -
Pral4350g00090 779 SUPERFAMILY Homeodomain-like 96 165 IPR009057 -
Pral4350g00090 779 Gene3D - 94 174 - -
Pral4350g00090 779 FunFam Homeobox-leucine zipper protein GLABRA 2 277 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4350g00090 Pral-Chr4350 521895 528024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4350g00090 97 778 Homeobox Transcription Factor Family AT1G79840 59.216 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4350g00090 START 4.8e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4350g00090 K09338 - mnt:21408879 988.408