Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4350g00048 ATGGATGATACCAAGGATGATGCAAGATATCCCCCTATTATGTATGGTGATAAAAACCATCAAGGTTATGGCTATCTGAATCATCAAAAACATTCGGTTAGGAGTTCTCCATATTCTCAGCCGGTCACAAATGAGTATGTGGAAGATAATGATGATGATGGAGATGGAGAGGATGTAGAACTTTTAGGAGGCGGGGAAGATGATGATGCTGATCAGAGTAATAGTATATATTCCCAAAATGATGTTGATGACAATGATTATGAGGAAGATGATGAGGGTGAAGATGATGATGAAAATGACAATGATGATAATGATGATACTGATGATGATGGTGGTAAGAAGAGGAGTTATAAGAAGAGAGTTGAAGATGATTCAGAATGGCATCCGAAAAAGCGAAAGCTGAAAAGCTTGATTTCAGCTTATGAAGTTGCCCCTCGTGTGCCAGCAGCACCATCAGGGGCAACTCGCTCAGACCCAAAACCATATGTTGGTTCCAGGAATTCCCTTACTGACTGGACTGAAAATGAGACATTCTTTCTTCTTGATGCCTGGGGGAATCGGTTTCTTCAACAGGGAAGGAAGAGTCTTCGGTCTGAGCAATGGCAAGAAGTTGCAGAGGAAGTATCAGAAGTTTCAAAAATTGAAAGGACAGATGCGCAATGTCGGAATCGCCTGGACACATTAAAGAAAAAATACAAAAAGGAGAAAACTAAATTAGCAGAAATGGGTGGTGGATCAAGCAAATGGGTCTATTTCAAAAGGATGGATAAGCTGTTGTCTTCCCCTCCACAGCATGCTGGTCTCTCTTGTGGGTTAGACTCAGGAGAGTATGTTTTTATGAACCCCAGAGTTTATTTGAACCGTGCAAATGGGTTAGATGAAATGAGGGATAGTCCAGGGAATTCAGAATCTACTGGTGAGTATTTAGGTGGACTTAATCCAAAGAAAAGAAGGCATGGGGGGAACAGCGATGAAACTTCCTGCAGATTGGTTGCTGAATCAATTCAGAAATTCGGTGAGATATATGAAAAGATTGAAAATAGTAAAAGGCAGCTGATGGTGGAACTGGAAAAGATGAGAATGGATTTCCATAGAGAATTGGAAACACAGAAGAGGCAGATATTAGAGAGATTGCAAAGTGAGATTGCAAAACTGGACCAGAGAGACAATGAGGATAATGATGTTTCTGTAGAGAAGGATCAGTAA 1206 0.4071 MDDTKDDARYPPIMYGDKNHQGYGYLNHQKHSVRSSPYSQPVTNEYVEDNDDDGDGEDVELLGGGEDDDADQSNSIYSQNDVDDNDYEEDDEGEDDDENDNDDNDDTDDDGGKKRSYKKRVEDDSEWHPKKRKLKSLISAYEVAPRVPAAPSGATRSDPKPYVGSRNSLTDWTENETFFLLDAWGNRFLQQGRKSLRSEQWQEVAEEVSEVSKIERTDAQCRNRLDTLKKKYKKEKTKLAEMGGGSSKWVYFKRMDKLLSSPPQHAGLSCGLDSGEYVFMNPRVYLNRANGLDEMRDSPGNSESTGEYLGGLNPKKRRHGGNSDETSCRLVAESIQKFGEIYEKIENSKRQLMVELEKMRMDFHRELETQKRQILERLQSEIAKLDQRDNEDNDVSVEKDQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4350g00048 401 MobiDBLite consensus disorder prediction 1 133 - -
Pral4350g00048 401 FunFam trihelix transcription factor ASIL2 172 234 - -
Pral4350g00048 401 Gene3D - 172 234 - -
Pral4350g00048 401 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 163 392 IPR044823 -
Pral4350g00048 401 MobiDBLite consensus disorder prediction 25 45 - -
Pral4350g00048 401 ProSiteProfiles Myb-like domain profile. 172 229 IPR001005 -
Pral4350g00048 401 MobiDBLite consensus disorder prediction 296 325 - -
Pral4350g00048 401 Coils Coil 342 388 - -
Pral4350g00048 401 MobiDBLite consensus disorder prediction 46 67 - -
Pral4350g00048 401 Pfam Myb/SANT-like DNA-binding domain 171 258 IPR044822 -
Pral4350g00048 401 MobiDBLite consensus disorder prediction 82 107 - -
Pral4350g00048 401 MobiDBLite consensus disorder prediction 108 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4350g00048 Pral-Chr4350 318410 320430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4350g00048 316 388 Trihelix Transcription Factor Family AT3G14180 41.096 3.51e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4350g00048 Myb_DNA-bind_4 4.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4350g00048 - - tcc:18595893 455.292