Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4350g00022 ATGGATGTTACCTCTCCAGAACCAAATAGAAACTCCCAAACCGACAGATATCCTTTGCTGATGGAGCAGTCTGAGAGCCACCATCAGCACATAATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCATCTCATGTTGCTCGACTTCCTGAAATACATTTAACGCAGAATGAAGATCAACAGTCCAGTGGTACACGAGACCCTACTAATCAAACATCTTCCTCATCTAGATTAAACTCCAGAAATTCTTCAACTAGAGGCGAGGGATATCGTCATCGAAGAAGGAACCCTTTAAATTCTGGACTATGGATTTCAGTTGAGCTTGTGGCCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCAAGGAATGAAAATCCACAAGCCCCATTATTTGCATGGATTGTGGGTTATACATCTGGTTGTGTTGCCATGCTGCCTATTCTATATTGGCGTTATCGAAGCCATAATCAAAGTAGTGAACAAGATACACCTCAACAATCTCAAGGATCTTCTGGAAGTGATCATCCATTGCCTACGTCATACACAGCTATCTCCAATGCTCATGTTTCAGATGAGGAGAATGGTCATGTGACAGAATCAGCTGCTAGAAGCACTAGGATTCCTGGAGCATTTTTTTCTAGGCTTAATGGATTAGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTTTGGGCAACGTGTGGATCTTTGGAGGCCACTCTTCTCCTTCGGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGCTATGCTATGCCATTTATCCTTTGTGCAACTATTTGTTGCTGCCTACCTTGCATTATTTCTGTTCTAGGCATTCGGGAGGATTTTTCTCAAACTAGAGGTGCAACAGTAGAGTCTATCAATGCCCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAGTGACAATCAGGATGTCAACACAGCTATAGACGAAGGTGGCATCTTTGCTGCGGGGACAGAAAAGGAGCGGGCCATATCTGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCGAAATATGCAGACAATGATGATCTTAGAGAGTTGCCCTGTCTTCATTTCTTCCACGTAGCGTGTGTTGACAAATGGTTGAAGATAAACGCATCGTGTCCTCTTTGTAAAAGTGATGCTGGCAAGATTAGTGGAGGGTCTCCTTCAGCTGGGGACTCCAGTTCGGTTTAG 1263 0.4236 MDVTSPEPNRNSQTDRYPLLMEQSESHHQHIIDITRNGDALSNSSHVARLPEIHLTQNEDQQSSGTRDPTNQTSSSSRLNSRNSSTRGEGYRHRRRNPLNSGLWISVELVATVGQIIASIVVLSLSRNENPQAPLFAWIVGYTSGCVAMLPILYWRYRSHNQSSEQDTPQQSQGSSGSDHPLPTSYTAISNAHVSDEENGHVTESAARSTRIPGAFFSRLNGLVDHFKMALDCFFAVWFVLGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFKLKKTENSDNQDVNTAIDEGGIFAAGTEKERAISGEDAVCCICLAKYADNDDLRELPCLHFFHVACVDKWLKINASCPLCKSDAGKISGGSPSAGDSSSV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4350g00022 420 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Pral4350g00022 420 SMART ringv_2 359 401 IPR011016 GO:0008270
Pral4350g00022 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 407 IPR013083 -
Pral4350g00022 420 MobiDBLite consensus disorder prediction 56 96 - -
Pral4350g00022 420 SMART ring_2 360 400 IPR001841 -
Pral4350g00022 420 FunFam E3 ubiquitin-protein ligase 343 409 - -
Pral4350g00022 420 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Pral4350g00022 420 SUPERFAMILY RING/U-box 353 406 - -
Pral4350g00022 420 MobiDBLite consensus disorder prediction 56 86 - -
Pral4350g00022 420 Pfam Ring finger domain 360 401 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4350g00022 Pral-Chr4350 159721 163950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4350g00022 1 411 C3H Transcription Factor Family AT1G80400 55.875 1.28e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4350g00022 - - gmx:100819729 644.425