Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4350g00020 ATGGAGCAGTCTGAGAGCCACCATCAGCACATAATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCATCTCATGTTGCTCGACTTCCTGAAATACATTTAACGCAGAATGAAGATCAACAGTCCAGTGGTACACGAGACCCTACTAATCAAACATCTTCCTCATCTAGATTAAACTCCAGAAATTCTTCAACTAGAGGCGAGGGATATCGTCATCGAAGAAGGAACCCTTTAAATTCTGGACTATGGATTTCAGTTGAGCTTGTGGCCACTGTGGGTCAGATCATAGCATCTATAGTTGTCTTGTCATTGTCAAGGAATGAAAATCCACAAGCCCCATTATTTGCATGGATTGTGGGTTATACATCTGGTTGTGTTGCCATGCTGCCTATTCTATATTGGCGTTATCGAAGCCATAATCAAAGTAGTGAACAAGATACACCTCAACAATCTCAAGGATCTTCTGGAAGTGATCATCCATTGCCTACGTCATACACAGCTATCTCCAATGCTCATGTTTCAGATGAGGAGAATGGTCATGTGACAGAATCAGCTGCTAGAAGCACTAGGATTCCTGGAGCATTTTTTTCTAGGCTTAATGGATTAGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTTTGGGCAACGTGTGGATCTTTGGAGGCCACTCTTCTCCTTCGGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGCTATGCTATGCCATTTATCCTTTGTGCAACTATTTGTTGCTGCCTACCTTGCATTATTTCTGTTCTAGGCATTCGGGAGGATTTTTCTCAAACTAGAGGTGCAACAGTAGAGTCTATCAATGCCCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAGTGACAATCAGGATGTCAACACAGCTATAGACGAAGGTGGCATCTTTGCTGCGGGGACAGAAAAGGAGCGGGCCATATCTGGAGAAGATGCTGTTTGTTGCATTTGCTTGGCGAAATATGCAGACAATGATGATCTTAGAGAGTTGCCCTGTCTTCATTTCTTCCACGTAGCGTGTGTTGACAAATGGTTGAAGATAAACGCATCGTGTCCTCTTTGTAAAAGTTGGAGCTTTAAAGGTTTTCATCAAACCCCTTTACTCGGGGGAGAAAAAAAAAAGCGTTTGCGTCGAGCATTTGGAGTTTGCTACTTTATGCTTTTCGGAGTGATGTATATGTAA 1260 0.4151 MEQSESHHQHIIDITRNGDALSNSSHVARLPEIHLTQNEDQQSSGTRDPTNQTSSSSRLNSRNSSTRGEGYRHRRRNPLNSGLWISVELVATVGQIIASIVVLSLSRNENPQAPLFAWIVGYTSGCVAMLPILYWRYRSHNQSSEQDTPQQSQGSSGSDHPLPTSYTAISNAHVSDEENGHVTESAARSTRIPGAFFSRLNGLVDHFKMALDCFFAVWFVLGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFKLKKTENSDNQDVNTAIDEGGIFAAGTEKERAISGEDAVCCICLAKYADNDDLRELPCLHFFHVACVDKWLKINASCPLCKSWSFKGFHQTPLLGGEKKKRLRRAFGVCYFMLFGVMYM 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4350g00020 419 MobiDBLite consensus disorder prediction 36 75 - -
Pral4350g00020 419 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 382 - -
Pral4350g00020 419 SMART ringv_2 339 381 IPR011016 GO:0008270
Pral4350g00020 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 385 IPR013083 -
Pral4350g00020 419 SUPERFAMILY RING/U-box 333 386 - -
Pral4350g00020 419 SMART ring_2 340 380 IPR001841 -
Pral4350g00020 419 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Pral4350g00020 419 Pfam Ring finger domain 340 381 IPR001841 -
Pral4350g00020 419 MobiDBLite consensus disorder prediction 36 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4350g00020 Pral-Chr4350 159721 164272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4350g00020 7 382 C3H Transcription Factor Family AT1G80400 57.330 3.42e-157 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4350g00020 - - gmx:100819729 616.69