Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4350g00017 ATGATGGAGAAATATGGTGGTTTGGGACTTGAGATCACGGAGCTGAGGCTGGGTCTTCCTGGAAGGGAGGGGAAGGAGAAGAATGAGAGGAAGAGGCTGTTCTCGGAGATTGATGATCATCGTCACGAGGGGGATGGCGGCTGCGGCGGAGACGATCAGAACAGCTCGTCAGCTGGTGGAGACCGGAAGGTGGAGGCGGCGAAGAATAATAATGAGGTGGTGGTGGGGTGGCCACCGGTGTGCTCGTACAGGAGGAAGAATGGGATGAACAACAACGAAGGGTCAAAAATGTATGTGAAAGTGAGCATGGATGGAGCTCCGTTCTTGCGCAAAATTGACTTGGAAAAGCTTAAGGGTTACTCTGAACTCGCTTTCGCCTTGGAAAAGCTCTTTGGTTGCTATGGAATCAAGGAGGCGTTGAAGAATGGAGACAAAACCGAACACGTTCCCATTTATGAGGACAAAGACGGTGACTGGATGCTCGTTGGGGATGTCCCTTGGGAAATGTTTATGGAGTCGTGCAAGAGGTTGAGGATAATGAAGAAATCAGAGGCAAAGGGATTTGGGGTGACGCCAAAAGGGACTCTGAAGGGATATGTAGAAGGCGTCACCAACTGA 618 0.5065 MMEKYGGLGLEITELRLGLPGREGKEKNERKRLFSEIDDHRHEGDGGCGGDDQNSSSAGGDRKVEAAKNNNEVVVGWPPVCSYRRKNGMNNNEGSKMYVKVSMDGAPFLRKIDLEKLKGYSELAFALEKLFGCYGIKEALKNGDKTEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSEAKGFGVTPKGTLKGYVEGVTN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4350g00017 205 MobiDBLite consensus disorder prediction 23 65 - -
Pral4350g00017 205 FunFam Auxin-responsive protein 91 192 - -
Pral4350g00017 205 MobiDBLite consensus disorder prediction 23 48 - -
Pral4350g00017 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 186 IPR003311 GO:0005634|GO:0006355
Pral4350g00017 205 Gene3D - 90 193 - -
Pral4350g00017 205 ProSiteProfiles PB1 domain profile. 96 182 IPR000270 GO:0005515
Pral4350g00017 205 SUPERFAMILY CAD & PB1 domains 87 181 - -
Pral4350g00017 205 Pfam AUX/IAA family 60 188 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4350g00017 Pral-Chr4350 142736 146398 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4350g00017 92 197 B3 DNA Binding Superfamily AT4G23980 40.566 5.43e-14 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pral4350g00017 AUX_IAA 1.2e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4350g00017 K14484 - gmx:547784 275.789