Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4346g00032 ATGGGATCCAGTGGTAGTAAAGCCGTTGCTTCTTGCAATTCATCGTCGAAGTCGTCGTCTTCGGGCAGCTTTCGTAAGCGTCGATCGAGGGGGCATAAAAGTTTTCAGTCGTATTGTTTAGGAACAACATCTGGATCTCATGACAGTGACAATGACGACCAGGTGTGTGATCAGAATAAAGAAAACGATAGTAATGTTACATACTCCAATGGGGATGAAACAGATGCAGATGAGGTGATATCAGAGTCTTTCAGAAAGATTAAATCTGATAAAATGCGATGTATCTCTCCTAATGTCCACCTTGATGAGTGGAGTCAAACAAGCATTTCTAACACTGCATCTAGAGCTGGTAGCAGTTCTGATCATCCAGCTTCAACTCAGTCTTTGAACCCTTCAAGTCGACTCCTTTCTCGGTTTAGCCTTATTCCTGGCAACGTAAGCTTCAGACTAAGCAGAACCACAAGTTTGGGGTCATCACGGCCTTGCCCTGTTTCTTCTGCAGGTCTCTCAATGTTTAACAATGAAGATGACCTTAATCCACAGCCTGGACCAACTTGTAGCTTTGCTAATCAAAATGAAGCTCTACAATGCAGTGACTTGCTTCCTGCATCACATTGCTATGAAGACACTCCTATTAATTTAAGGTCTAACAACCCTTCATCAGATTCCTATGGCACCTTGCAGAGCAATTCAACAAATTCTTCTATGCAGAGTATGAGTAGAGATGAAGATGGTGCAAGAGAAGCGTTAAATCTTAACTTATTTTCTCCAAGAATTCATGCCAGAACTGAAAATGTTGAGATGAGACATAACGATCGCCGAAGTGGAGCTCGAGAACCTGTTGAACGGAATGTTCGCTTTAGTCGTACTCTGAGTGTTGGAAGGCTTCGTGATAGGGTCCTTCGTAGATCAACAATATCAGACTTCACTTTTTGCCCACTGCAACAAGAAAGGGATGCAACAGATGCTGGTCAAGATATTGGAAGACAAGCAGGGGAGAGAGAGTCAAGAGTGCTCCCATCTGATAGTGACTCTACAAGTTCCCCCTCTACATCTGGATATCCTCCATCCAACATGTCTAGCTCCTTGTTTGGGATCCAAGACTATGAGATCGAGTCTTCACGATCAAGAGAACCTAGGTATCGTGATCTGCTGGAAAACAGATCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGCAGCCGATTTGAAAACCTGTCTGGGCATGACAGGTCATGTATTTTATCCGGCCAACATAGAAATGGTCGTTGTACATGCCGTAGTAGTGGTCGTGATGCCAATTCAAATGATGATACTGGGGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTAGAATCCTTGCCTGTCAAATTATACACAAAGTTGCATAAACATCAAGAGGATGCTGCTCAATGCTATATATGCCTTGTGGAATATGAGGATGGAGACAACATGCGAGTACTACCTTGTCATCATGAATTTCATTTAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCATTGTGCCGTGGGGACATCTGCATTGCTGATTCGATACCTACCGAGAACTGA 1722 0.4355 MGSSGSKAVASCNSSSKSSSSGSFRKRRSRGHKSFQSYCLGTTSGSHDSDNDDQVCDQNKENDSNVTYSNGDETDADEVISESFRKIKSDKMRCISPNVHLDEWSQTSISNTASRAGSSSDHPASTQSLNPSSRLLSRFSLIPGNVSFRLSRTTSLGSSRPCPVSSAGLSMFNNEDDLNPQPGPTCSFANQNEALQCSDLLPASHCYEDTPINLRSNNPSSDSYGTLQSNSTNSSMQSMSRDEDGAREALNLNLFSPRIHARTENVEMRHNDRRSGAREPVERNVRFSRTLSVGRLRDRVLRRSTISDFTFCPLQQERDATDAGQDIGRQAGERESRVLPSDSDSTSSPSTSGYPPSNMSSSLFGIQDYEIESSRSREPRYRDLLENRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRSSGRDANSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHLTCIDKWLKEIHRVCPLCRGDICIADSIPTEN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4346g00032 573 Pfam Ring finger domain 517 560 IPR001841 -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 1 22 - -
Pral4346g00032 573 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Pral4346g00032 573 SMART ring_2 518 559 IPR001841 -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 110 131 - -
Pral4346g00032 573 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 572 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 212 245 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 330 362 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 212 240 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 35 49 - -
Pral4346g00032 573 SUPERFAMILY RING/U-box 496 566 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 341 362 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 1 77 - -
Pral4346g00032 573 FunFam Putative RING zinc finger domain superfamily protein 487 565 - -
Pral4346g00032 573 MobiDBLite consensus disorder prediction 60 74 - -
Pral4346g00032 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 564 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4346g00032 Pral-Chr4346 192505 197264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4346g00032 236 567 C3H Transcription Factor Family AT5G45290 58.140 5.37e-114 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4346g00032 - - gmx:100786091 757.673