Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4346g00004 ATGGAGTTCAGTGAGCATGAGAGCATGACAGTTCGAGAAGTCTGTGCAAATGGGAGTTACATGGGAACAGCAGAAGTTGAAGCAAAGCTTGATGAAGGAGATATTCAAGAGGCAGAATCTTCGTTGCGAGAAGGGCTATCACTCAATTTTGAGGAAGCAAGAGCACTTCTGGGCAAGTTGGAGTATCAGAGAGGGAATGTGGAAGGCGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAAACTTCCCTTCCTGAAAAACCATTAACCAAGAAGGGGCGCAATCGTACTGAACCAGCTCCTTCAGTCTCTCAACATGCTGCTAGTCTGGTGCTTGAAGCCATCTACTTAAAAGCGTGTTCATTACAAATCCTAGGGAGATTAACTGAAGCTGCAAGTGAATGCAAAAGTGTGCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAGGTAGACAATAGATTGCAAGAAATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGACACAGGCCGGGTGCTATCATGAGGCAATATCTGCCTATAGACGAGCCCTTCTTAGCCAATGGAATCTTGATGATGATTGCTGTGCAAGAATTCAGAAAAATTTTGTTGTATTTTTGTTGTACAGTGGGGTAGAAGCTAGCCCACCCAGTTTAGCGGTTCAGATTGATGGGTCATATGTACCTAAAAATAATTTGGAAGAGGCAATTCTGCTTCTTATGATTCTTATCAGAAAGTTTTGCCTTGGTAAGACCAAATGGGACCCATCAGTGATGGAGCACCTGACTTTTGCACTTTCTATATGTGGCCAAACGTCTATTTTGGCTAAGTCACTTGAAGAGCTATTGCCTGGAGTATATAATCGGCTTGATCGTTGGAAATATTTAGCTTTATGTCACAGTGGAGCTGGGCATAACAAAAGTGCTTTGAATCTACTGCGGAGGTCTCTGCACATTCATGATCGACCAGATGAGGTTATATCACTGCTATTGGCTGCCAGGATCTGCAGTGAGGATCCTCAACTCGCTCCTGAGGGAGTAGTTTATGCACAAAGGGCAATCACAAGTGCTCAGGGACCAGATGAGCATCTTAAAGGTGTGGGTCTCCGAATGTTGGGACTTTGTCTTGGAAGGCAAGCTAAGGCTGCTTCCTCTGACTCTGAGAGGTCTCGCCTTCAGTCGAAAGCTTTGAAATCATTGGAGGAGGCAGCTGGGTTGGAGCCAAAAAATTCTGATCTGACTCTTGAGTTGGCTGTTAAATATGCAGAGCACCGAAATTTGACTGATGCTCTGTGCTATGCAAAGAAATTCTTTGATGAAACAGGTGGCTCTATATTAAAAGGTTGGAGAATGCTTGGTCTGGTTTTGTCTGCTCAGCAAAGATTTTCAGAGGCTGAGGTAGTCACAGACGCAGCTCTAGATCAAACTACAAAATGGGAACAGGGGCCACTACTTAGGCTGAAAGCAAAGCTGAAGACCTCCCAATCACGGTACATGGATGCTATTGAAACATATCGGTACCTCCTTGCATTGGTTCAAGCCCAGAGAAAATCCTTTGGCTCACTATTTACTAGTTCACAGGCTGATGATGGTAAAGTAAATGAATTTGAGATTTGGCATGGTCTGGCAAATCTATATGCTAGTCTTTCTCATAGGAAGGATGCTGAAATATGTCTGCAAAAGGCCAAAGTGTTGAAGCCCTATTCTGCAGCATTGATGCACACCAAAGGTCTAATATTCGAAGGACGTGAGGAAGATCAAGCTGCTCTTGGTGCTTTCTTCAGTGCATTCATGCTTGATCCAAGCTACGTTCCAAGCAAGATCTTGTTGGGTTCTCTGATTCTAAAACTCGGTCCAAAAGGTTTGCCTGTGGCTAGAAGCTTACTTGCTGAAGCTCTGCGAATAGACCCCACGAACCACAAGGCTTGGTATTATATGGGTATGGTTCACAAAGAGGATGGTCGGATGAGTGATGCTGCTGACTGCTTCCAGGCAGCCTCCATGCTTGAAGAATCGGATCCGATTGAAAGTTTCAGCTCTGTTCTCTGA 2085 0.4456 MEFSEHESMTVREVCANGSYMGTAEVEAKLDEGDIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQTSLPEKPLTKKGRNRTEPAPSVSQHAASLVLEAIYLKACSLQILGRLTEAASECKSVLDAVEKIFYQGIPDIQVDNRLQEIVSHAVELLPELWTQAGCYHEAISAYRRALLSQWNLDDDCCARIQKNFVVFLLYSGVEASPPSLAVQIDGSYVPKNNLEEAILLLMILIRKFCLGKTKWDPSVMEHLTFALSICGQTSILAKSLEELLPGVYNRLDRWKYLALCHSGAGHNKSALNLLRRSLHIHDRPDEVISLLLAARICSEDPQLAPEGVVYAQRAITSAQGPDEHLKGVGLRMLGLCLGRQAKAASSDSERSRLQSKALKSLEEAAGLEPKNSDLTLELAVKYAEHRNLTDALCYAKKFFDETGGSILKGWRMLGLVLSAQQRFSEAEVVTDAALDQTTKWEQGPLLRLKAKLKTSQSRYMDAIETYRYLLALVQAQRKSFGSLFTSSQADDGKVNEFEIWHGLANLYASLSHRKDAEICLQKAKVLKPYSAALMHTKGLIFEGREEDQAALGAFFSAFMLDPSYVPSKILLGSLILKLGPKGLPVARSLLAEALRIDPTNHKAWYYMGMVHKEDGRMSDAADCFQAASMLEESDPIESFSSVL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4346g00004 694 Gene3D Tetratricopeptide repeat domain 19 213 IPR011990 GO:0005515
Pral4346g00004 694 Gene3D Tetratricopeptide repeat domain 229 537 IPR011990 GO:0005515
Pral4346g00004 694 SUPERFAMILY TPR-like 406 678 IPR011990 GO:0005515
Pral4346g00004 694 Gene3D Tetratricopeptide repeat domain 634 687 IPR011990 GO:0005515
Pral4346g00004 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Pral4346g00004 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Pral4346g00004 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Pral4346g00004 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Pral4346g00004 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Pral4346g00004 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Pral4346g00004 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Pral4346g00004 694 SMART tpr_5 494 527 IPR019734 GO:0005515
Pral4346g00004 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Pral4346g00004 694 SUPERFAMILY TPR-like 53 449 IPR011990 GO:0005515
Pral4346g00004 694 Gene3D Tetratricopeptide repeat domain 538 633 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4346g00004 Pral-Chr4346 28607 33016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4346g00004 2 694 Calmodulin-binding Proteins AT2G43040 71.920 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4346g00004 K21843 - gmx:100814609 1032.71