Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4344g00005 ATGGGAAGGGGTAGGGTCGAACTGCGGCGTATTGAGAACAAAATCAGCCGTCAAGTGACGTTTTCAAAGAGGCGAAGTGGACTGTTCAAGAAAGCTCAAGAAATCTCTGTGCTATGTGATGCTCAAGTTGCTGTGATTATCTTCTCCACCAAAGGCAAGCTCTTTGAGTTCTCCTCTGATTCCAGCTTGGATGGCATTCTGGAACGATATGAGAGACAGACGCACACAGAACAACTTGCTGAAGCTAACATCGAATCTCAGGGAAACTTGTCCTTGGAGTTCTACAAACTTACCACCAAGGCTAAAATCTTGGAGAAGAACATTAGGAACTATGGAGGACATGATCTTGATATCTTGAGTTTGAGAGAGCTTCAGAACTTGGAGCAACAGATCGACACAGCTATGAAGCGTATTCGAACAAGAAAGAACCAAATGATGAATGAATCCATCTCGGAGCATCAGAAGAAGGCAAGGGCATTGCAGGAGCAAAACAACATATTAGCAAAGAAGGTAAAGGAGAAAGAAAAGACACTGACTGAAAATCCCCAGAAGGAGAAGGACACTCAAGGACATAATTTACCTAGCTTCAATGTACCTGCTCAACAGCTACAACTTCCTACTTTAACTCTTGGTGCGAATTTACATCAAGCAAGAGGATCAGAAGAGGAAGAAGTGGAAGCTCATCAGACAGCACCCAGAAGCGCCACTATCATTCCACCATGGATGTCGCGCCACTTGATCAGATAA 747 0.4404 MGRGRVELRRIENKISRQVTFSKRRSGLFKKAQEISVLCDAQVAVIIFSTKGKLFEFSSDSSLDGILERYERQTHTEQLAEANIESQGNLSLEFYKLTTKAKILEKNIRNYGGHDLDILSLRELQNLEQQIDTAMKRIRTRKNQMMNESISEHQKKARALQEQNNILAKKVKEKEKTLTENPQKEKDTQGHNLPSFNVPAQQLQLPTLTLGANLHQARGSEEEEVEAHQTAPRSATIIPPWMSRHLIR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4344g00005 248 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pral4344g00005 248 MobiDBLite consensus disorder prediction 172 187 - -
Pral4344g00005 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Pral4344g00005 248 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4344g00005 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pral4344g00005 248 MobiDBLite consensus disorder prediction 220 248 - -
Pral4344g00005 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pral4344g00005 248 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral4344g00005 248 MobiDBLite consensus disorder prediction 172 193 - -
Pral4344g00005 248 Coils Coil 124 177 - -
Pral4344g00005 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4344g00005 248 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4344g00005 Pral-Chr4344 236621 255241 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4344g00005 1 232 MADS-box Gene Family AT1G26310 49.580 5.96e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4344g00005 K-box 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4344g00005 K09264 - qsa:O6P43_009197 285.419