Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4339g00017 ATGAAGAAGGAAGTGGACGGCGACCCTCCAGTTCTTCCTGAAAAAATCATCAGAAACATTCTCAAACGACTTCCAGTAAAATCCCTAGTCCGATTTCAATGTGTGTGCCGACATTGGAGAAATCTCTTCAAGACCGCAGCTTTCATCGCAGACCACCTGCACCACTCAAATCATCAAAACCCTTATCTCCTTTTCCAACGGGATGGCTGGGATGATCCTTCGAACTTGTATTGGCTTGATTCCGAGATGCAAGTTCGGGATTTTCAGAACCCTCCTTTGCTCGATTACTTGAAGCGTGGTAAGATCGTTGGTTCTAGCAATGGCTTGCTCTGTGTTGAAATCAACAAGCATGATGTGTCTCCTCATTTCCTTTTAGTGTGGAATCCAGCGATTAGAGAGGTTAGACTGGTGCCCGAAACTAATTTTCATGAGGATTATTATCTCTATTCTGTAGCATTTGGGTTCAGTCCAGTTATTAATGATTACAAGATAGTGATATTGTATGTTAATGAGTATTATACTGAGCTTTCTGCCGTGAAGGTGTATTCTTTAAGCTCAGGGTCATGGAAGGAAGTAAAATTTAGGGTCAATCACAGTACATGTCTTCATTCTCATTGTGTCACTGTTAATGGTGTTATGTTTTGGTTGGGTTCAAAGCGGGTTGGGGAGGATCCAGATGATAATGAGGGTCTGATTGTTTCACTTGACCTAGCAACCGAAGCGTTTAGAGTGATCCCCATACCTGAGCATGACTTTTTTTCAACGCTTGCTGTGTATGAGGAAAAACTTGCAATGGTTTCTGGCATCAGAAGCACAGGGCATTCTGTTATCCATCTGTGGGTAATGGAGCAGGGTGTAGTAGCATCTGGGGAGAGATGGAATTGGACTAAGAAATATACCAGCAGCCCTTATCCATGCAAGTTATATCCCAGGACTATTTGGAGAAATGTAATTGTCTGCACGGATGACATGGAGGACGAATCCACCGCTGTTCTCTTCAATCTCACTACTAAAAGAATCAAGAAGCTGGCCATTAGCAAATGTGACGATGGTCATGATATTTTCAATTATGCTGAAAGTCTCGTACCAGTTGGAGGAATGAAATCATTTGCAAATTTTCTGTAG 1125 0.4231 MKKEVDGDPPVLPEKIIRNILKRLPVKSLVRFQCVCRHWRNLFKTAAFIADHLHHSNHQNPYLLFQRDGWDDPSNLYWLDSEMQVRDFQNPPLLDYLKRGKIVGSSNGLLCVEINKHDVSPHFLLVWNPAIREVRLVPETNFHEDYYLYSVAFGFSPVINDYKIVILYVNEYYTELSAVKVYSLSSGSWKEVKFRVNHSTCLHSHCVTVNGVMFWLGSKRVGEDPDDNEGLIVSLDLATEAFRVIPIPEHDFFSTLAVYEEKLAMVSGIRSTGHSVIHLWVMEQGVVASGERWNWTKKYTSSPYPCKLYPRTIWRNVIVCTDDMEDESTAVLFNLTTKRIKKLAISKCDDGHDIFNYAESLVPVGGMKSFANFL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4339g00017 374 SMART fbox_2 12 52 IPR001810 GO:0005515
Pral4339g00017 374 Pfam F-box domain 12 44 IPR001810 GO:0005515
Pral4339g00017 374 NCBIfam F-box protein interaction domain 107 336 IPR017451 -
Pral4339g00017 374 ProSiteProfiles F-box domain profile. 12 52 IPR001810 GO:0005515
Pral4339g00017 374 CDD F-box_AtFBW1-like 10 48 - -
Pral4339g00017 374 SUPERFAMILY Galactose oxidase, central domain 121 346 IPR011043 -
Pral4339g00017 374 Gene3D - 11 47 - -
Pral4339g00017 374 Gene3D - 124 367 IPR015915 GO:0005515
Pral4339g00017 374 Pfam F-box associated domain 207 319 IPR013187 -
Pral4339g00017 374 SUPERFAMILY F-box domain 11 71 IPR036047 GO:0005515
Pral4339g00017 374 PANTHER BNACNNG10540D PROTEIN 11 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4339g00017 Pral-Chr4339 121319 122599 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4339g00017 180 332 Carbohydrate Esterase AT1G25141 24.540 9.26e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4339g00017 - - pcin:129286166 513.842