LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4339g00017	ATGAAGAAGGAAGTGGACGGCGACCCTCCAGTTCTTCCTGAAAAAATCATCAGAAACATTCTCAAACGACTTCCAGTAAAATCCCTAGTCCGATTTCAATGTGTGTGCCGACATTGGAGAAATCTCTTCAAGACCGCAGCTTTCATCGCAGACCACCTGCACCACTCAAATCATCAAAACCCTTATCTCCTTTTCCAACGGGATGGCTGGGATGATCCTTCGAACTTGTATTGGCTTGATTCCGAGATGCAAGTTCGGGATTTTCAGAACCCTCCTTTGCTCGATTACTTGAAGCGTGGTAAGATCGTTGGTTCTAGCAATGGCTTGCTCTGTGTTGAAATCAACAAGCATGATGTGTCTCCTCATTTCCTTTTAGTGTGGAATCCAGCGATTAGAGAGGTTAGACTGGTGCCCGAAACTAATTTTCATGAGGATTATTATCTCTATTCTGTAGCATTTGGGTTCAGTCCAGTTATTAATGATTACAAGATAGTGATATTGTATGTTAATGAGTATTATACTGAGCTTTCTGCCGTGAAGGTGTATTCTTTAAGCTCAGGGTCATGGAAGGAAGTAAAATTTAGGGTCAATCACAGTACATGTCTTCATTCTCATTGTGTCACTGTTAATGGTGTTATGTTTTGGTTGGGTTCAAAGCGGGTTGGGGAGGATCCAGATGATAATGAGGGTCTGATTGTTTCACTTGACCTAGCAACCGAAGCGTTTAGAGTGATCCCCATACCTGAGCATGACTTTTTTTCAACGCTTGCTGTGTATGAGGAAAAACTTGCAATGGTTTCTGGCATCAGAAGCACAGGGCATTCTGTTATCCATCTGTGGGTAATGGAGCAGGGTGTAGTAGCATCTGGGGAGAGATGGAATTGGACTAAGAAATATACCAGCAGCCCTTATCCATGCAAGTTATATCCCAGGACTATTTGGAGAAATGTAATTGTCTGCACGGATGACATGGAGGACGAATCCACCGCTGTTCTCTTCAATCTCACTACTAAAAGAATCAAGAAGCTGGCCATTAGCAAATGTGACGATGGTCATGATATTTTCAATTATGCTGAAAGTCTCGTACCAGTTGGAGGAATGAAATCATTTGCAAATTTTCTGTAG	1125	0.4231	MKKEVDGDPPVLPEKIIRNILKRLPVKSLVRFQCVCRHWRNLFKTAAFIADHLHHSNHQNPYLLFQRDGWDDPSNLYWLDSEMQVRDFQNPPLLDYLKRGKIVGSSNGLLCVEINKHDVSPHFLLVWNPAIREVRLVPETNFHEDYYLYSVAFGFSPVINDYKIVILYVNEYYTELSAVKVYSLSSGSWKEVKFRVNHSTCLHSHCVTVNGVMFWLGSKRVGEDPDDNEGLIVSLDLATEAFRVIPIPEHDFFSTLAVYEEKLAMVSGIRSTGHSVIHLWVMEQGVVASGERWNWTKKYTSSPYPCKLYPRTIWRNVIVCTDDMEDESTAVLFNLTTKRIKKLAISKCDDGHDIFNYAESLVPVGGMKSFANFL	374

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4339g00017	374	SMART	fbox_2	12	52	IPR001810	GO:0005515
	Pral4339g00017	374	Pfam	F-box domain	12	44	IPR001810	GO:0005515
	Pral4339g00017	374	NCBIfam	F-box protein interaction domain	107	336	IPR017451	-
	Pral4339g00017	374	ProSiteProfiles	F-box domain profile.	12	52	IPR001810	GO:0005515
	Pral4339g00017	374	CDD	F-box_AtFBW1-like	10	48	-	-
	Pral4339g00017	374	SUPERFAMILY	Galactose oxidase, central domain	121	346	IPR011043	-
	Pral4339g00017	374	Gene3D	-	11	47	-	-
	Pral4339g00017	374	Gene3D	-	124	367	IPR015915	GO:0005515
	Pral4339g00017	374	Pfam	F-box associated domain	207	319	IPR013187	-
	Pral4339g00017	374	SUPERFAMILY	F-box domain	11	71	IPR036047	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4339g00017	Pral-Chr4339	121319	122599	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4339g00017	180	332	Carbohydrate Esterase	AT1G25141	24.540	9.26e-07	47.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4339g00017	-		-	pcin:129286166	513.842

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