Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4337g00019 ATGGGAATACAGGGTCTTTTGCCCCAGTTGAAATCGATTATGGTACCAATCCACATCAAGCAGTTCGAGGGTTGCAATGTAGCGGTCGACACATATTCTTGGCTCCACAAAGGTGCCTTGTGTTGCAGTACCGAGCTTTGCAAGGGGTTACCTACATCCAGACACATTGAGTATTGCATGCGTAAAGTAAATTTGCTGCGGCACTATGGTGTTAAGCCTATTCTTGTATTTGATGGAGGCCTTCTACCAATGAAGAGCGAACAAGAGAACAAGCGTGCAAGGGCGAGAAAGGAAAATCTTGCACGTGCCGTTGAACTTGAGTCACATGGAAATTCTACTGCTGCTTTTGAGTGCTACCAGAAAGCTGTTGATATCTCACCTCTAGTTGCATGTGAACTAATTCAGGTGTTGAAGCAGGAGAATGTGCCTTATCTTGTAGCTCCTTATGAGGCGGATGCCCAGATGACATTCTTGGCAGCTAGCAAACAAGTTGAAGCAGTTATAACTGAAGACTCTGATCTTGTACCATTTGGTTGTCCAAGAATCATCTTTAAAATGGACAAGTTTGGTCAAGCTGTAGAATTTCAGCATTCCATGCTACAAAAGAACAAAGAGCTTAGTTTTGAAGGGTTCACCCGCCAAATGCTTCTTGAAATGTGTATATTGAGTGGTTGTGACTATCTGCAGTCCTTGCCAGGTATGGGTCTTAAAAGGGCTCATGCAATTATCAAGAGGTTCAAAAGTTATGACAAGGTTCTTAAGCATTTGAGATTCAATGGAGTTTCTGTCCCTTCCTCTTATGAAGAATCATTCAAGAAGGCTATATTGACTTTTCAATATCAACGAGTTTATAATCCAATCATTGAAGATATTGTTCATTTGTCTGATGTACCCGCTGATATTGGTGATGAGTTAGACTTCTTAGGACCATCAATGCCAAAAGAAATAGCGCAAGGAATAGCAAAAGGGGATCTTGATCCATTTACTAAAATGCCATTTCAGCAGGTAGAGAATTGTACTGCTGGACTGGCAATGGAGAGGGCTTCAGAAATAAAAACATCACATTCCAAGATCACAAAGAAAAGGATAGATTTACCTGTGCAGAAGAATGTTTTAACCAAGTATTTTTCAAAAAGAAAATTCATAGCACCTCGGATGTCACCTACTGCTACAGATCAAAGCACAGTGGGTTCCTCTTCTGTCAATTCCCAGGACCATGAGACTTTGGAAACTGCTTCTGCTAAAACAAAAAGCTCTGCTGCATCCTTAGGTGACTGTAAAATTTTGGCTAAAGTACCTCCTGTTAATAACTATGTTGAAAATAGGCTACCCCCCAAATTTTCAGAGTTGATGGAATCTTCACGTTTCAACATGGCAGGTGAGAGGTGGAAAAATCCCGAACATACTATACTGCAACAGCCCAAAGAGCCAATTCATAAACCTTGTCTGGGATTGAATAAGGATAATAAGGATACGAATGTCAAAGATACTATTGAGGTAAACACTGTAGGGGCTACAAGAAAGGTCCTTGTAAGGAGTCCTTATTTTCAGCATAAACAAGCAGAAAAAGATAATTGTGACCAAAAGCCAGATTGTTTGGTCGAAGATGATTTTGCCATTGGTGAGCACAAGAATACCGTACTTGACAGTGGTTTAGGCAAAGTTGAAGATACTTTTGAGGGAAAGACTGCGGAGGCAACAAGAAAGGTCATTGCAAGGAGTCCTCGTTTTCAGCATAAGCAAGAAGAAAAGAATAACTGTGAGAGAAAGCATGATTGTTTGATCAAAGATGATTTTGCCATTGGTGAGCATAAAAATACTATATCTGACAGCGCTTTAGGCAAAGTCGAAAATACTATCGAGAGGGAGACTACGCAAGCAGCAAGAAAGGTCCTTGTAAGGAGTCCTTTTTTCCAGCATAAACAAGTAGAAAAGATTGATTGTCACCAAAAGCAAGATTGTTTGGTCAAAGATGATGTTGCCATAGGTGAGCCCGAAAATACCATATCGGACAACCATATGATGAATAACGCCCTGAAAAGGAAGATCTCTGCTGACAGTGCTCAAAGTGAAAACCTGCAGCCGGGCAACATGGAGTCTGCCTCAACTCTTCCTGACCATGGTTGTGATCAAAATTCCGATAGAACATCTACAAAGGGGAATTCTGAAGAGAAGTTTGGTGCAAATATTTCCCACCTAGGCCATTACTCAAAAATCTCAGAGAAATCTTTAGAAAAATTTACCTTAATGTTATCATCCTTCACATACACCTCATCTGGTTCTCGTGCCAGCGGTCTCCGTGCTCCTTTGAGGGATGTTCAGAACACTTGTAACAGTAGGCCAAAAGCTGTGGACATCGAACAGTTTGCATTTGCGCCAAAAAAACAAAAGACTGACAGAGTTAGTCGATGA 2412 0.41 MGIQGLLPQLKSIMVPIHIKQFEGCNVAVDTYSWLHKGALCCSTELCKGLPTSRHIEYCMRKVNLLRHYGVKPILVFDGGLLPMKSEQENKRARARKENLARAVELESHGNSTAAFECYQKAVDISPLVACELIQVLKQENVPYLVAPYEADAQMTFLAASKQVEAVITEDSDLVPFGCPRIIFKMDKFGQAVEFQHSMLQKNKELSFEGFTRQMLLEMCILSGCDYLQSLPGMGLKRAHAIIKRFKSYDKVLKHLRFNGVSVPSSYEESFKKAILTFQYQRVYNPIIEDIVHLSDVPADIGDELDFLGPSMPKEIAQGIAKGDLDPFTKMPFQQVENCTAGLAMERASEIKTSHSKITKKRIDLPVQKNVLTKYFSKRKFIAPRMSPTATDQSTVGSSSVNSQDHETLETASAKTKSSAASLGDCKILAKVPPVNNYVENRLPPKFSELMESSRFNMAGERWKNPEHTILQQPKEPIHKPCLGLNKDNKDTNVKDTIEVNTVGATRKVLVRSPYFQHKQAEKDNCDQKPDCLVEDDFAIGEHKNTVLDSGLGKVEDTFEGKTAEATRKVIARSPRFQHKQEEKNNCERKHDCLIKDDFAIGEHKNTISDSALGKVENTIERETTQAARKVLVRSPFFQHKQVEKIDCHQKQDCLVKDDVAIGEPENTISDNHMMNNALKRKISADSAQSENLQPGNMESASTLPDHGCDQNSDRTSTKGNSEEKFGANISHLGHYSKISEKSLEKFTLMLSSFTYTSSGSRASGLRAPLRDVQNTCNSRPKAVDIEQFAFAPKKQKTDRVSR 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4337g00019 803 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Pral4337g00019 803 Gene3D - 209 281 - -
Pral4337g00019 803 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Pral4337g00019 803 MobiDBLite consensus disorder prediction 686 725 - -
Pral4337g00019 803 FunFam exonuclease 1 209 281 - -
Pral4337g00019 803 FunFam Exonuclease 1, putative 1 207 - -
Pral4337g00019 803 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 338 IPR036279 -
Pral4337g00019 803 MobiDBLite consensus disorder prediction 386 416 - -
Pral4337g00019 803 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Pral4337g00019 803 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Pral4337g00019 803 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Pral4337g00019 803 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Pral4337g00019 803 ProSitePatterns XPG protein signature 2. 141 155 IPR019974 GO:0016788
Pral4337g00019 803 SMART xpgineu 138 208 IPR006086 GO:0004518
Pral4337g00019 803 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Pral4337g00019 803 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Pral4337g00019 803 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Pral4337g00019 803 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Pral4337g00019 803 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pral4337g00019 803 Gene3D - 1 207 - -
Pral4337g00019 803 MobiDBLite consensus disorder prediction 686 716 - -
Pral4337g00019 803 SMART xpgn3 1 99 IPR006085 GO:0004518
Pral4337g00019 803 MobiDBLite consensus disorder prediction 387 416 - -
Pral4337g00019 803 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 479 IPR006084 -
Pral4337g00019 803 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4337g00019 Pral-Chr4337 126958 134621 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4337g00019 1 267 Core DNA Replication Machinery Family AT5G26680 25.714 2.96e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4337g00019 K10746 - gmx:100798062 893.649