Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4337g00010 ATGGCGTTCCCAAATGGTCAAGCCATGTCGGGTTCATCATCTCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACAAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTCGCTCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAGGCAACAATTGAAAGGTACAAGAAAGCATGCTCAGATTCTTCTGGTGCTGGATCCACTTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCTGCCAAACTGCGTGCTCAAATCAGTAACCTGAGGAATAACAACAGGCAAATGATGGGGGAGACTCTGGCAGGAATGAATGCAAGAGAACTCAAAAACTTGGAGGGTAAGTTAGAGAGAGGCATTAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTGTTTGCAGAAATCGAGTACATGCAGAAGAGGGAGGTAGACCTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCTGAGAGTGAGAGAAACCAGCAGCAGCAGCAGCAACATAACATGAATGTGTTGCCGGGAGGCTCAAACTATGAGGCAATGCAGTCTTCAGATGAGCATCAGTTTGACTCACGAGGCTTCTTCCAGGTCACTGGTTTGCAACCTACTAATCACTATGCTCCCCAGGACCACATGTCCCTTCAATTAGTGTGA 759 0.4651 MAFPNGQAMSGSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLAGMNARELKNLEGKLERGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLLRAKIAESERNQQQQQQHNMNVLPGGSNYEAMQSSDEHQFDSRGFFQVTGLQPTNHYAPQDHMSLQLV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4337g00010 252 MobiDBLite consensus disorder prediction 1 17 - -
Pral4337g00010 252 Coils Coil 182 202 - -
Pral4337g00010 252 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4337g00010 252 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 SUPERFAMILY SRF-like 20 91 IPR036879 GO:0003677|GO:0046983
Pral4337g00010 252 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 203 - -
Pral4337g00010 252 FunFam agamous-like MADS-box protein AGL11 31 114 - -
Pral4337g00010 252 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Pral4337g00010 252 Coils Coil 142 162 - -
Pral4337g00010 252 Coils Coil 105 132 - -
Pral4337g00010 252 MobiDBLite consensus disorder prediction 1 25 - -
Pral4337g00010 252 Pfam K-box region 101 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4337g00010 252 CDD MADS_MEF2_like 20 94 IPR033896 GO:0000977|GO:0045944
Pral4337g00010 252 Gene3D - 31 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4337g00010 Pral-Chr4337 65969 73224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4337g00010 17 252 MADS-box Gene Family AT3G58780 65.401 5.57e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4337g00010 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4337g00010 K09264 - gmx:732595 393.66