Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4333g00002 ATGCTGCTGGGGCAAGCTCCTCCTGTGAGCTTCAGAACCAAACCCAATTGCTTGGAATTGCAGATTCAAAGCCATGTGCGTCTCTTGTCCTTTGCTCAGATTTGTTTCTGTGACACTCCATGTACGAAAATGCTGCGCTCAACTGTTGGAAATGCATTTCTCGTTAGAGCTGGGCATTCTCCCACACCCAAAGACGTTCTTTCTTGGAACCCTAACACTGCCAACGATGGTTTGAGTTCGAATGTAGAGAATTCACCAGATATTAGCATTGTAACTGAAGGCTTTGAGCGTGATTCGGTTATTACAAATAGTGATTCTATGATAAAATCTAGGGGCAGGTTATCTGGAAGTTTTGACAAACTGAATGCGCAGAAAGTCAAGGGCCTCATTCACAGAACTATTCATAAGAAGCAGGAAAGAAGCATTAATGATGATAACCTGGTTGTGGAACATCCAGAATTAGGAATAGAAGATGACTGGGAACAATCTGAGGAATCAAATTCTCACGTAGGTTATCAGAACACACCCAATAAATCTCAAAACAATGACAACAGAACAGAGAGTTCAGGTATATTAGTTGAAAGACATTCTGCCTCGCGTTTAAAAGGATGGGGTGGTGGAGGATCTTCACGTACTTTTAAGACTGAATCAAAAAAACTGCTAAAGGAACAGAGAAAACGATTGTCTGACAGTGACTTTTTCAGTCGAAAGTCCTTCAAAGATCTAGGATGCAGTGAATATATGATTGAATCTCTGGCAAAGCAATTTTATCTACGGCCTTCACATATACAGGCCATGGCATTTGAACCAGTATATACTGGAAAGAGTTGTATGATAGCTGATCAAAGTGGTTCTGGAAAGACTGTAGCATATCTTGCACCAATAATTCAGAAGCTTAGACAAGAAGAATTGGAAGGACTTTCCAATTGCTCTTCACAAGCTCCTCGAGTGGTTATATTGGCACCAACTGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGTCGATCGATGTCAAAATCTGGTGTTCCATTCAAATCTATGGTGGTAACAGGTGGCTTTCGACAGAGAACTCAATTGGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCAACTCCCGGCCGTTTTATGTTCCTCATCAAGGAAGGCTTCTTGCAGTTAACAAATTTAAGATGTGCTGTGTTGGATGAGGTAGATATACTTTTTGGTGATGAGGATTTTGAAGTGTCGCTTCAGTGCTTGATTAATTCTTCACCAGTTGCCACACAATATTTATTTGTGACCGCAACTTTACCAAAAGACATTTACAATAAACTAGTTGAAGTTTTTCCTGATTGCGAAGTGATCATGGGACCTAGCATGCACCGGATAAGCTCTCGACTTGAGGAGGTTCTGGTTGATTGCAGTGGAGCTGATGGGGAAGAAAAATCCCCCGATACAGCATTTCTTAATAAGAAAACAGCTCTTCTACAGATTGCAGAAGGAAGTCCCGTCCCAAAAACCATTGTCTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAGAATGCATTGAAGCGATTTGATAGGAAAGAGGCGCGCGTACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATTACGGCTTGCTAACATGGAAAAGTTTACACATTCTCAATCAAAGGAAGTCTCCCAGTTTCTGGTTTGCACTGATAGAGCGTCACGAGGTATCGACTTTACCGGAGTGGATCATGTTATACTTTTTGACTTCCCACGTGACCCGAGCGAATATGTCCGCCGTGTTGGAAGAACTGCAAGGGGTGCTGCTGGAAAGGGCAAGGCATATATCTTTGTGGTTGGCAAGCAAGTATCACTTGCACGTAAAATCATGGATAGAAATAGGAAGGGTCACCCTCTACATCATGTGCCTTCTGCCTATGAGCTCATGAAGTAG 1935 0.4207 MLLGQAPPVSFRTKPNCLELQIQSHVRLLSFAQICFCDTPCTKMLRSTVGNAFLVRAGHSPTPKDVLSWNPNTANDGLSSNVENSPDISIVTEGFERDSVITNSDSMIKSRGRLSGSFDKLNAQKVKGLIHRTIHKKQERSINDDNLVVEHPELGIEDDWEQSEESNSHVGYQNTPNKSQNNDNRTESSGILVERHSASRLKGWGGGGSSRTFKTESKKLLKEQRKRLSDSDFFSRKSFKDLGCSEYMIESLAKQFYLRPSHIQAMAFEPVYTGKSCMIADQSGSGKTVAYLAPIIQKLRQEELEGLSNCSSQAPRVVILAPTAELASQVLANCRSMSKSGVPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVSLQCLINSSPVATQYLFVTATLPKDIYNKLVEVFPDCEVIMGPSMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALLQIAEGSPVPKTIVFCNKIETCRKVENALKRFDRKEARVQVLPFHAAMTQELRLANMEKFTHSQSKEVSQFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAAGKGKAYIFVVGKQVSLARKIMDRNRKGHPLHHVPSAYELMK 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4333g00002 644 Gene3D - 208 449 IPR027417 -
Pral4333g00002 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 613 IPR027417 -
Pral4333g00002 644 MobiDBLite consensus disorder prediction 166 187 - -
Pral4333g00002 644 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 484 644 IPR001650 -
Pral4333g00002 644 Pfam DEAD/DEAH box helicase 262 435 IPR011545 GO:0003676|GO:0005524
Pral4333g00002 644 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 160 641 - -
Pral4333g00002 644 CDD SF2_C_DEAD 485 612 - -
Pral4333g00002 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 268 449 IPR014001 -
Pral4333g00002 644 Pfam Helicase conserved C-terminal domain 488 601 IPR001650 -
Pral4333g00002 644 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 237 265 IPR014014 GO:0003724
Pral4333g00002 644 CDD DEADc 248 437 - -
Pral4333g00002 644 SMART helicmild6 512 602 IPR001650 -
Pral4333g00002 644 SMART ultradead3 256 464 IPR014001 -
Pral4333g00002 644 Gene3D - 471 635 IPR027417 -
Pral4333g00002 644 MobiDBLite consensus disorder prediction 160 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4333g00002 Pral-Chr4333 169268 177392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4333g00002 238 623 Eukaryotic Initiation Factors Gene Family AT3G19760 27.202 3.54e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4333g00002 K13179 - qsa:O6P43_017081 744.962