Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4331g00008 ATGGAGGACGAGGCTGATATATACGATGGTGTTAGAGCTCAATTCCCTCTTAGTTTTGGAAAGCAGTCCAAGTCACAGACCTCTCTTGAAGCCATCCACAATGCCACTCGTCGTTCCAGTTCCAATCTCAGCTCTGATCCCTCTGCAGCGACCACCCACACCAAAAGTACCAATGACCTCCCTTCTATCTCATCCTCTTCCAAGTCCTGGCTTCTTTCCCTCCGCAACTCTAAAATCCCTAACCCTGATCCTACCGCCGATCGTGGTGGGGGTTCTTCCACGATGGGACCGCCTCGGCCGCCTCTACCCGTGGAATCTGATGAGGACGGCGGTGTTATGGTCGGACCGCCTCGGCCGCCTGAGGAAAAAGACGATGATAGTGCGATGATTGGGCCTCCTCCACCTCCTGTTGGTTTGGGTTCCGGCGAAGAAGGGGATGACGATGGGGAGATGATTGGCCCGCCAAGACCTCCCCCTAGTTCGAATTTGGGTGCGTCAACTTCTGAGGATGATTCAGACGAAGATGAGGTGGGGAATCGGTTTCGAATTCCGCTCAGTAACGAGATTGTTCTCAAGGGACACACCAAGGTTGTGTCGGCTCTTGCTGTGGATCACTCTGGGTCTAGAGTGCTTTCTGGAAGTTATGACTATACAGTGCGTATGTATGACTTTCAAGGAATGAATTCACGGTTGCAATCATTTCGACAATTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCGAGTGGAGATCGCTTTTTGTGTGTAACAGGGTCAGCTCAAGCAAAGATCTATGATCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGGGACATGTATATCCGTGATCTTAAAAACACTAAAGGCCACATATCTGGATTGACGTGGGGAGAATGGCACCCAAAAACCAAGGAAACAATTTTAACATCATCAGAGGATGGATCACTGCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACAACATGTGCATGGGATCGTGAAGGTAAATGCATTGCTGGTGCTATAGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGATGGGGAAGTAGGCCAGATATATATATTGACAAAGGCCATTCTGATGATATTACTGGTCTGAAATTTTCTGGTGATGGAAGAGTTTTACTGTCAAGAAGCTTTGATGGTTCATTGAAGGTATGGGATTTGCGCAAAATAAAGGAACCTCTAAAGGTATTTGAAGATCTTCCGAATAATTATGGGCAAACAAATGTTGCTTTTAGCCCTGATGAACAACTGTTTTTTACCGGAACATCTGTTGAAAGAGAGAGTTCAAGTGGAGGTTTATTGTGCTTTTATGATTGTACAAACCTTGAGCTCGTTTCAAGAGTTGGCATATCGGCCACTTGTAGTGTTGTGCAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGACAAAGGCCAAGGAGGAACTCATATACTATATGATCCAACCATCAGTGAGAGAGGAGCTCTTGTTTGTGTCGCACGTGCACCGAGGAAGAAGTCCATTGATGATTTTGAGGCAAAACCGGTTGTTCACAATCCTCATGCCCTGCCACTATTTAGAGATCAGCCAAGCCGTAAACGTCAGCGAGAGAAAATACTGAAGGATCCATTGAAGTCTCATAAGCCTGAACTTCCAATAACGGGGCCCGGGTTTGGTGGGCGAGTTGGTGCAAGTCAAGGAAGCTTGCTGACTCAATATCTTCTGAAGAAAGGGGGCATGATTAAGGAGACGTGGATGGAGGAAGATCCGAGAGAAGCCATCCTGAAATATGCTGGTGTTGCAGCTAATGATCCAAAATTCATTGCTCCAGCATATGCAAAAACCCAGCCTGAGCCTGTTTTCCAAACTTCAGATTCTGACGAGGAAGAGAAATAA 1989 0.4646 MEDEADIYDGVRAQFPLSFGKQSKSQTSLEAIHNATRRSSSNLSSDPSAATTHTKSTNDLPSISSSSKSWLLSLRNSKIPNPDPTADRGGGSSTMGPPRPPLPVESDEDGGVMVGPPRPPEEKDDDSAMIGPPPPPVGLGSGEEGDDDGEMIGPPRPPPSSNLGASTSEDDSDEDEVGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPFEGHQVRNLSWSPSGDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDREGKCIAGAIGDGSIQIWSIKPGWGSRPDIYIDKGHSDDITGLKFSGDGRVLLSRSFDGSLKVWDLRKIKEPLKVFEDLPNNYGQTNVAFSPDEQLFFTGTSVERESSSGGLLCFYDCTNLELVSRVGISATCSVVQCAWHPKLNQIFATVGDKGQGGTHILYDPTISERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPITGPGFGGRVGASQGSLLTQYLLKKGGMIKETWMEEDPREAILKYAGVAANDPKFIAPAYAKTQPEPVFQTSDSDEEEK 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4331g00008 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 225 - -
Pral4331g00008 662 FunFam WD repeat-containing protein 70 280 522 - -
Pral4331g00008 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 327 - -
Pral4331g00008 662 MobiDBLite consensus disorder prediction 642 662 - -
Pral4331g00008 662 MobiDBLite consensus disorder prediction 19 177 - -
Pral4331g00008 662 SUPERFAMILY WD40 repeat-like 175 509 IPR036322 GO:0005515
Pral4331g00008 662 ProSitePatterns Trp-Asp (WD) repeats signature. 312 326 IPR019775 -
Pral4331g00008 662 Gene3D - 158 277 IPR015943 GO:0005515
Pral4331g00008 662 SMART WD40_4 184 223 IPR001680 GO:0005515
Pral4331g00008 662 SMART WD40_4 282 325 IPR001680 GO:0005515
Pral4331g00008 662 SMART WD40_4 380 419 IPR001680 GO:0005515
Pral4331g00008 662 SMART WD40_4 233 270 IPR001680 GO:0005515
Pral4331g00008 662 SMART WD40_4 329 373 IPR001680 GO:0005515
Pral4331g00008 662 CDD WD40 190 508 - -
Pral4331g00008 662 Gene3D - 278 520 IPR015943 GO:0005515
Pral4331g00008 662 MobiDBLite consensus disorder prediction 19 80 - -
Pral4331g00008 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 334 IPR001680 GO:0005515
Pral4331g00008 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 421 IPR001680 GO:0005515
Pral4331g00008 662 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 124 661 - -
Pral4331g00008 662 Pfam WD domain, G-beta repeat 347 373 IPR001680 GO:0005515
Pral4331g00008 662 Pfam WD domain, G-beta repeat 189 223 IPR001680 GO:0005515
Pral4331g00008 662 Pfam WD domain, G-beta repeat 290 325 IPR001680 GO:0005515
Pral4331g00008 662 Pfam WD domain, G-beta repeat 388 419 IPR001680 GO:0005515
Pral4331g00008 662 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Pral4331g00008 662 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Pral4331g00008 662 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Pral4331g00008 662 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 421 - -
Pral4331g00008 662 FunFam Nucleotide binding protein 132 279 - -
Pral4331g00008 662 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4331g00008 Pral-Chr4331 237178 241195 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4331g00008 118 435 U-box Gene Family AT1G04510 23.276 6.51e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4331g00008 K24752 - zju:107405234 1072.38