LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4325g00010	ATGGATAATGGGGATCTTGATGGCAGTGGAGAAGATGAGTTTCATGGGCAGAGGGGTCGCAAGTACCGGCCCGTGTTGGCCAACGATCGTGCCGTGCTTGAGATGTCTTCCATGGATCCTGGATCGTCGTCTTCTTCGTATCCCAATCAACCTGCTTCAGTCAAAACAATTAATATAAATGCGGGTGCAAATGTGGGTTCTGATGCGAAAGAAGGGAACTCTCCTCGTCATGCACAGGCTAATGGAATGCAAGGGGAATCCAAATTGGAATTGTTTGGTTTTGATTCTCTTGTCAACATTCTTGGGCTCAAAAGTATGACTGGAGAGCAGCTTCAACAGCCATCTAGTCCTAGAGATGGTGAGAATATTTCCATCACAGTTGGGCAGCCAAGGCCTGCAGGTCCCCAGCTTGGAACATTGATGGGTGTATTCATTCCGTGCTTGCAAAGCATATTGGGAATTATCTATTACATTCGGTTCTCTTGGATTGTTGGTATGGCTGGCATAGCAGAGTCGTTGTTGCTTGTTACTTTATGTGGCTCCTGTACTTTTCTAACCTCAATATCACTGAGTGCTATTGCAACCAATGGTGCCATGAAGGGTGGTGGACCATACTATCTCATTGGTCGTGCTCTTGGTCCAGAAGTTGGAGTTAGCATTGGTCTTTGTTTCTTTCTGGGGAACGCAGTTGCTGGAGCCCTTTATGTGTTGGGAGCTGTAGAAACTTTTTTGAAAGCAGTGCCTAAAGCTGGGATTTTTGGAGAGACTATCACGCAAGTTAATGGTACTGCCATTGCAGAACCGATACACGTTATAAGTTCCCATGATATGCAAATTTATGGAATTGTTGTGACTATTATATTATGCTTTATTGTATTTGGAGGTGTAAAGATCATTAATCGGGTTGCTCCTGCTTTTCTTATACCTGTTTTGTTCTCGCTGGCCTGCATATTCATGGGGATTTTCTTGGCAAGAAAGGATAAGCCTGCAGATGGAATCACGGGACTGAGTTTGGAGACATTTAAAGAAAATTGGAGTTCAGATTATCAAAAGACTGATGCCAATGGAATTCCCGATGCTAATGGATCAGTAACCTGGGGTTTCAATTCATTGGTTGGGCTCTTTTTCCCAGCCGTGACGGGAATAATGGCAGGTTCAAATCGATCATCGTCTCTGAAAGATACTCAACAATCAATTCCTGTTGGAACCTTAGCTGCTACTCTTGCGACTTCTGCTATGTATCTGATTACTGTTTTCTTGTTTGGTTCTGTTGCAACGAGAAACAAGCTGTTAACAGATAGGCTACTTACGGCTACCATTGCTTGGCCTTTTCCATCTTTAATCAAAATTGGGATTATTCTTTCAACTCTGGGCGCTGCTCTTCAGAGCCTGACGGGAGCCCCACGTTTGCTTGCAGCAATAGCCAATGATGATATTTTACCTGTTCTGAACTACTTCAAAACTGTGGATGGCAGTGAGCCTCACCTTGCTACACTTTTCACCGCTTTCCTCTGTATTGGGTGTGTCATAATTGGCAATCTGGATCTCATCACCCCAACAATAACTATGTTCTTCCTTCTATGTTATGCGGGTGTCAACTTGTCCTGCTTTCTTCTGGATCTGCTTGATGCTCCTAGTTGGCGTCCTCGGTGGACTTTTCACCACTGGAGCTTGTCTCTTTTTGGTGCATTACTTTGTGTAGTCATCATGTTCCTGATCTCTTGGTCATTCACAGTGGTGTCTTTAGCTCTTGCAAGCCTTATATACAAGTATGTCAGTATCAAAGGAAAGGCTGGGGACTGGGGAGATGGTTTTAAAAGTGCATATTTCCAATTAGCACTTCGCAGCCTTAGGTCACTTGGAGCAAGCCAAGTGCACCCAAAGAATTGGTATCCAATTCCTTTAATATTCTGCCGGCCTTGGGGCAAATTGCCAGAAAATGTACCTTGCCATCCCAAACTAGCAGACTTTGCTAACTGCATGAAAAAAAAAGGTAGAGGAATGTCCTTATTTGTCTCGATTTTGGATGGTGACTACCATGAATGTGCCGAAGATGCCAAGACTGCTTGCAGACAACTAAGTACCTACATTGATTACAAGAATTGTGAAGGAGTCGCTGAGATAGTTGTAGCCCCCAACATGTCAGAAGGCTTTCGTGGTATTATACAGACTATGGGCCTTGGCAATCTTAAGCCAAACATTGTCGTGATGCGCTATCCAGAAATATGGCGACGTGAGAACTTGACGGAGATCCCAGCAACCTTTGTTGGGATAATTAATGATTGCATTGTAGCAAACAAAGCAGTAGTCATAGTGAAGGGTCTTGATGAGTGGCCTAATGAGTACCAGAAGCAATACGGCACAATTGATTTGTATTGGATTGTGAGAGATGGTGGTTTAATGCTTCTTCTCTCCCAGCTTCTTCTTACGAAGAAGAGCTTTGAGAGTTGCAAGATTCAAGTTTTTTGCATTGCAGAAGAGGATGCAGATGCAGAGGTGCTGAAGGCTGATGTTAAGAAGTTTCTCTATGATCTTCGGATGCAAGCAGAAGTCTTTGTCATAACAATAAAATGGGATTCAACAATGGACGGTGGCGAGTCTCAGCAAGATGAATCATATGAAGCATTTACTAGCGCGCAGCGAAGAATCAGTGATTACTTGGCCGAAATGAAGGCAACAAAGCGGGACGATGCCCCTCTGATGGCTGACGGTAAGCCTGTGGTTGTGAATGAGAAGCAGGTGGAGAAGTTTCTTTACACAACATTGAAGCTGAATTCTACAATGCTGAAGTACTCAAGAATGGCAGCAGTTGTGCTGGTAAGCCTGCCTCCGCCTCCATTGAACCACCCTGCTTATTTCTATATGGAGTATATGGATCTGTTGCTGGAGAAGGTACCCAGGATTTTGATTGTAAGAGGATACCGTAGAGATGTTGTGACTCTATTCACATAG	2952	0.4394	MDNGDLDGSGEDEFHGQRGRKYRPVLANDRAVLEMSSMDPGSSSSSYPNQPASVKTININAGANVGSDAKEGNSPRHAQANGMQGESKLELFGFDSLVNILGLKSMTGEQLQQPSSPRDGENISITVGQPRPAGPQLGTLMGVFIPCLQSILGIIYYIRFSWIVGMAGIAESLLLVTLCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPKAGIFGETITQVNGTAIAEPIHVISSHDMQIYGIVVTIILCFIVFGGVKIINRVAPAFLIPVLFSLACIFMGIFLARKDKPADGITGLSLETFKENWSSDYQKTDANGIPDANGSVTWGFNSLVGLFFPAVTGIMAGSNRSSSLKDTQQSIPVGTLAATLATSAMYLITVFLFGSVATRNKLLTDRLLTATIAWPFPSLIKIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKTVDGSEPHLATLFTAFLCIGCVIIGNLDLITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRWTFHHWSLSLFGALLCVVIMFLISWSFTVVSLALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSLFVSILDGDYHECAEDAKTACRQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKKSFESCKIQVFCIAEEDADAEVLKADVKKFLYDLRMQAEVFVITIKWDSTMDGGESQQDESYEAFTSAQRRISDYLAEMKATKRDDAPLMADGKPVVVNEKQVEKFLYTTLKLNSTMLKYSRMAAVVLVSLPPPPLNHPAYFYMEYMDLLLEKVPRILIVRGYRRDVVTLFT	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4325g00010	983	MobiDBLite	consensus disorder prediction	37	52	-	-
	Pral4325g00010	983	FunFam	Cation-chloride cotransporter 1	136	600	-	-
	Pral4325g00010	983	MobiDBLite	consensus disorder prediction	1	52	-	-
	Pral4325g00010	983	Gene3D	Amino acid/polyamine transporter I	136	600	-	-
	Pral4325g00010	983	MobiDBLite	consensus disorder prediction	8	27	-	-
	Pral4325g00010	983	PANTHER	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	104	980	IPR004842	GO:0006811\|GO:0015377\|GO:0016020
	Pral4325g00010	983	Pfam	Amino acid permease	142	618	IPR004841	GO:0016020\|GO:0055085
	Pral4325g00010	983	Pfam	Solute carrier family 12	784	982	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Pral4325g00010	983	Pfam	Solute carrier family 12	652	773	IPR018491	GO:0006811\|GO:0016020\|GO:0022857
	Pral4325g00010	983	NCBIfam	K-Cl cotransporter	76	983	IPR004842	GO:0006811\|GO:0015377\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4325g00010	Pral-Chr4325	396913	411999	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4325g00010	137	983	Inorganic Solute Cotransporters	AT1G30450	82.429	0.0	1441

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4325g00010	K14427		-	gmx:100795205	1645.17