Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4325g00008 ATGAGACTATCTTCATCTGGTTTTAGCCCTCCACCTCCAGAAGGAGAAAAGCGAGTCCTGGATTCGGAACTTTGGCATGCATGCGCTGGCCCTCTTGTTTCCTTACCAGCAGTGGGAAGTCGTGTCGTCTACTTTCCTCAAGGTCACAGTGAACAGGTTGCTGCGTCTACCAACAAGGAAGTAGATGCCCATATTCCTAATTACCCTAGCTTGCCTCCGCAGCTTATTTGTCAGCTTCATAATGTGACCATGCATGCGGATGCAGAGACAGATGAAGTATATGCGCAGATGACCTTGCAAGCTCTAAATCCTCAAGAGCAGAAAGAGGCGTACCTTCCAGCAGAGCTGGGCACTCCTAGTAAGCAGCCAACAAATTACTTTTGCAAAACTTTGACTGCCAGTGACACAAGCACACATGGGGGTTTCTCTGTTCCACGCCGGGCAGCTGAGAAAGTGTTTCCGCCTCTGGACTTCTCCCAACAACCTCCTTGTCAAGAACTAATTGCCAGAGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGTGGTCAACCCAAAAGGCATCTACTTACAACAGGATGGAGTGTGTTTGTGAGTGCTAAAAGGCTCGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAGTTGCTTCTTGGTATCCGGCGTGCAAATCGTCCACAAACTGTGATGCCTTCATCAGTGTTATCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCTGCTCATGCAGCTTCAACAAACAGTCGTTTTACCATTTTCTATAACCCACGCGCTAGCCCATCTGAATTTGTCATACCATTAGTCAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGCATGCGCTTCAGGATGCTGTTTGAAACTGAGGAATCAAGTGTGCGAAGATACATGGGCACCATAACTGGTATTAGCGTGGATCCTGTTCGATGGCCAAATTCACATTGGCGTTCTGTCAAGGTTGGCTGGGATGAATCTACAGCCGGAGAGAGGCAACCTAGAGTGTCCCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCATCTTTTCCTCTTAGGCTTAAACGACCATGGCCTCCAGGATTGCCTTCTTTCCAGGGCATGAAGGATGACAATTTTAGCTTGAGTAATCAGCTATTATGGCTTCGAGATACCACAGACAGAGGTCTTCAGTCTCTTAACTTCCAGGGGTTTGGGTTCAATCCTTGGGTGCAGCCAAGGCTTGATCCCTCCATGTTGACTTCACCTACTGACATGTACCAAGCTATGGCTAATACTGCAGTTCAGGATATGAGGACTTTGGATGCTTCCAAACAGCATCCTGCATCTTTTCTTCAATTTCAGCAGCCACAGAACTTCCCCAACAGGACTGCTGCTTTAATGCAGGCCCAAATGTCCCAGCCGTCTCAACTGCAGCAGGGTTGTCAGAGCAATCAAGAGAATCAGAATTCTTCTCAATCCTTGGCTCCAACTCAGATGCAACTTCAGCAGCAGCACTCGTTCAATAATCAACATCAGCAGCCACCGCAAGTGGGTGATCATCAGCAGATTTCAAGTGCTTCTGCAATGTCTCAGTTTGTATCTACTCCACAACCTAATTCACCATCCATGCAAGCTATGTCTTCGCTTTGCCAACAGCAAAACTTTTCTGATTCAAACGTGAATTCCTTGAATGGATCTGTAGTTTCTCCCTTGCACAGCATCTTGAGTTCATATTCCCAAGATGAATCATCCCACCTTCTCAACCTACCCAGGACTAGCTCTTGGATACCTGTTCAAACATCTAGTGCCTGGCCCTCCAAGCGTGTTGCGGTGGATCCTCTACTTTCTTCTGGAGCTTCTCATTGCACTCTGCCTCAGTTGGAGTTGTTAGGGCAGCCACAAAGTACCATGTCACAGAATGTTATTTCGTTGCCACCTTTTCCTGGTCGGGAGTGTTCGATAGACCAAGAAGGGAGCACCGATCCTCAGAACAATCTTTTATTTGGTGTTAATATAGACCCCTCATCTCTTATAGTGCAGAATGGGATGCCGAGCCTCAAGGGAGTTGGCAACAACAATGACTCTGGGATTGAGCAATTTCAGTCATCTAATTACCTGGATACTACAGGAACTGATTCATCATTGAATCATGGAATTACACATAGCATCGCTGAATCAAACTTCCTTGAGATTCCAGATAATGGGGGTCAAGGAAACCCACAAAACAAAACCTTTGTCAAGGTTTACAAGTCAGGGTCCTGCGGAAGATCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAACTTGCCCGAATGTTTGGCCTTGAAGGCAAGTTAGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGACGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAGTAGTGTATGGTGTATCAAAATACTTTCTCCCCAAGAAGTGCAGCAGCAAATGGGCAACAATGGGCTCGAGCTTCTGAGCTCAGTCCCAATTCAGAGGCTCTCTAATGGTGTCTGTGATGACTATGCGAACCATCCTGACCCGAGAAATTTAAGCACTGGGATAGCTACCAATGGTGTGACAATCTAG 2667 0.4634 MRLSSSGFSPPPPEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQALNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLVKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDXDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSSFPLRLKRPWPPGLPSFQGMKDDNFSLSNQLLWLRDTTDRGLQSLNFQGFGFNPWVQPRLDPSMLTSPTDMYQAMANTAVQDMRTLDASKQHPASFLQFQQPQNFPNRTAALMQAQMSQPSQLQQGCQSNQENQNSSQSLAPTQMQLQQQHSFNNQHQQPPQVGDHQQISSASAMSQFVSTPQPNSPSMQAMSSLCQQQNFSDSNVNSLNGSVVSPLHSILSSYSQDESSHLLNLPRTSSWIPVQTSSAWPSKRVAVDPLLSSGASHCTLPQLELLGQPQSTMSQNVISLPPFPGRECSIDQEGSTDPQNNLLFGVNIDPSSLIVQNGMPSLKGVGNNNDSGIEQFQSSNYLDTTGTDSSLNHGITHSIAESNFLEIPDNGGQGNPQNKTFVKVYKSGSCGRSLDITKFSSYHELRSELARMFGLEGKLEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVSSVWCIKILSPQEVQQQMGNNGLELLSSVPIQRLSNGVCDDYANHPDPRNLSTGIATNGVTI 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4325g00008 889 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pral4325g00008 889 MobiDBLite consensus disorder prediction 450 564 - -
Pral4325g00008 889 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Pral4325g00008 889 MobiDBLite consensus disorder prediction 458 564 - -
Pral4325g00008 889 SUPERFAMILY CAD & PB1 domains 753 831 - -
Pral4325g00008 889 MobiDBLite consensus disorder prediction 652 679 - -
Pral4325g00008 889 Gene3D - 752 845 - -
Pral4325g00008 889 Gene3D - 125 228 IPR015300 -
Pral4325g00008 889 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pral4325g00008 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 843 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4325g00008 889 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4325g00008 889 ProSiteProfiles PB1 domain profile. 756 840 IPR000270 GO:0005515
Pral4325g00008 889 FunFam Auxin response factor 125 229 - -
Pral4325g00008 889 Gene3D - 291 363 - -
Pral4325g00008 889 Pfam AUX/IAA family 752 840 IPR033389 -
Pral4325g00008 889 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pral4325g00008 889 FunFam Auxin response factor 291 363 - -
Pral4325g00008 889 SMART B3_2 127 229 IPR003340 GO:0003677
Pral4325g00008 889 FunFam Auxin response factor 751 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4325g00008 Pral-Chr4325 305143 312014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4325g00008 756 843 B3 DNA Binding Superfamily AT1G19220 62.500 1.04e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4325g00008 AUX_IAA 4.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4325g00008 - - gmx:100798719 1440.63