Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4318g00021 ATGCGAGAGAAATCAGCACATTTTGACTGCATAGATGAGATGACTCATTCAGATATGGATCGGCGAAGGCATGGGAATTCTAATTCTGAACCTTCTACCGTTGTGAGTAGTGCCAACATTTTGCGGCCAAATATCCGCGCAGTGGCAATGGCTTCAGGGAACACGAGTAATGTTGATTCCCACTATTCACCAGATGTCTATGACACTGCAGTAATGCATAGAGGGACACAATACAATGCCATTCAAAATCAACGTAATCTTGATATGGGTGTTGCAGCTGTGGCCAACTTGCATTATTCTGGCATGAATCCTTCTTCTAGTACTGGTGTATTACCGCTTCCTTCAAATCACGGAGCCTATGATCAGTTGCCAGCGTCAACCACATTTGCTGTATACGGAGTTTCTTCAGATAATTTTGGGAGGATCAGCAGCTATGCAGATGACGTCAGAGCTTCATTCAAAAGGAAAAATGCTGAAACTGTCAGGGGCAATTTCCCACATTTTGATGCCTCAGCTAGTTCTTCAGTCGTTCCCCCAGATGCAAGGCACTCTGACGGGGTTACTATTATGGATACTGCTTCCTTGCCCCCTCCTCAATTCCGAGGAAATAGCATCCCTTCACCCATGGACTTAGGTCCCTTTGGTAGTTTGTGGAGCAGGTCAGGTGAGTCTGTTATGGTGCATGAACATAGCCATTTGATTCAAGGTAATTATTTAGGGCAGCCCTTCCAGCCAGTTGCTCCTCCCTGGTTGGATCAACAGTTGAACAACAGTCACAGTGATGGGCATGCTACAGCTTGGAATCAGTCTCTTCCAATGCCTTACGTGCAAGCACCCAATGTTAATGGAAGTTCATTGGAGAATGCAACTATGGGTTTGCAGAGATATCATGATTCAGCTAGTAACATTAATGGCCTCAGGTTTGTTCATCCTCTTGTCAACCACCAGTACCATAATTATCATCATCCAGCAGTACCAATGAGAGGATTCAGAGGCCACAATATCATGTTTCAACCTCCAGTAACTGCAGCTTCTTATAGAGTTCCTACAAATCCTTTACGCAATGCTGTGATCCCTGCACAGAATGGTTTTGAGATGGGTCATAGGCCTGTTGGCCTTGTACCTTCAGCAGGCCTACAGGTATATCGTCCTCATAGAGGATACATGAATGAGACAACAATTGGGCATCGAAATCTTCACCCTATGGGCTATCTCCAAGTTGATGATGTTGCAATACTGGATGAAGTGGGATTGGTCGACCATCACAGAGATATGCGCTTGGACATTGAGGATATGTCTTACGAGGAGCTTCTCGCATTGAGTGAGCGAATTGGCAACGTAAGCACTGGTTTATCAGAAGAGTCCATTTCAGCTTTAATGAAAACTAGAATTTATGCAACACCCACTATTATTAACCTGGAAGAGGAAGAAGCTTCAGAGGATCAGGAAACTGATTCATGCACAATATGCCTGGAGAAATATGAGAACAAACAGAAGATAGGAATTCTTCAATGCGGTCATGAGTATCATGCACATTGCTTGAAGAGATGGCTTAAGGAGAAAAATGTATGTCCCATATGCAAATCGGAAGCATTGAGTCCGGGAAAGGACAAGGATATAAAAACCAAATGA 1632 0.44 MREKSAHFDCIDEMTHSDMDRRRHGNSNSEPSTVVSSANILRPNIRAVAMASGNTSNVDSHYSPDVYDTAVMHRGTQYNAIQNQRNLDMGVAAVANLHYSGMNPSSSTGVLPLPSNHGAYDQLPASTTFAVYGVSSDNFGRISSYADDVRASFKRKNAETVRGNFPHFDASASSSVVPPDARHSDGVTIMDTASLPPPQFRGNSIPSPMDLGPFGSLWSRSGESVMVHEHSHLIQGNYLGQPFQPVAPPWLDQQLNNSHSDGHATAWNQSLPMPYVQAPNVNGSSLENATMGLQRYHDSASNINGLRFVHPLVNHQYHNYHHPAVPMRGFRGHNIMFQPPVTAASYRVPTNPLRNAVIPAQNGFEMGHRPVGLVPSAGLQVYRPHRGYMNETTIGHRNLHPMGYLQVDDVAILDEVGLVDHHRDMRLDIEDMSYEELLALSERIGNVSTGLSEESISALMKTRIYATPTIINLEEEEASEDQETDSCTICLEKYENKQKIGILQCGHEYHAHCLKRWLKEKNVCPICKSEALSPGKDKDIKTK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4318g00021 543 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 150 533 IPR045191 GO:0061630
Pral4318g00021 543 MobiDBLite consensus disorder prediction 1 27 - -
Pral4318g00021 543 Pfam Ring finger domain 485 528 IPR001841 -
Pral4318g00021 543 ProSiteProfiles Zinc finger RING-type profile. 487 528 IPR001841 -
Pral4318g00021 543 SMART ring_2 487 527 IPR001841 -
Pral4318g00021 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 532 IPR013083 -
Pral4318g00021 543 MobiDBLite consensus disorder prediction 1 35 - -
Pral4318g00021 543 SUPERFAMILY RING/U-box 476 532 - -
Pral4318g00021 543 CDD RING-H2_RNF24-like 485 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4318g00021 Pral-Chr4318 299855 302977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4318g00021 405 532 C3H Transcription Factor Family AT2G15530 47.059 4.47e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4318g00021 K19041 - qsa:O6P43_029149 605.134