LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4316g00007	ATGGATCCCACCAAGAAGCGAAAGCTTGATGACAACGGCGTCGTCCCTCCTGATTCCGACTTAAACCTCACTCCTTCCGACGCTCGTAAAATCATTGAGCGCTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAGGAAGCCGTCGCTCGCCACGCTGACGTCCTCGACGCCGTGCGGTCAATCGCAGACCCTGATGTTACCCAGCGTAAGCTGTTTATCCGTGGTCTTGGATGGGAGACCACCACTGACGGCCTTCGCTCCCTGTTTTCCGCCTATGGTGAGCTTGAAGAAGCCATTGTGATTCTTGATAAGGCCACCGGTAAGTCTAAGGGTTATGGTTTTGTCACCTTTAAGCACGTCGATGGCGCTTTGCTTGCTCTGAAAGAACCCAGCAAGAGGATAGATGGTCGCGTTACTGTTACGCAGCTTGCTGCAGCTGGGAATACGGGATCAAATACCAATGCTGCCGACATAGCGATGCGGAAGATATATGTTGCGAATGTGCCGTCTGATCTACCGGCCGACAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAGGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCACTTTTTGTGTACAAGACGCCAGAGGGCGCGCAAGCGGCACTTGTGGATCCGGTGAAGATGGTCGAGGGAAGGCAGCTGAATTGCAAGTTAGCGATAACCGATGGGAAGCAAGGGAAGCGAGGTGGTGCTGGGCCGATGGGACCTGACGGAATTCAAGGTCCAGGGAATGCTCATGGTGACGGAATGGGTTTGGCTCCACCGTCTTCCATGCCAGGGTCGCTTTCCGGTCAGTATGGGGGCCCTGTCGGCATGGGATCATATGGGGGTTTTGGGAGTGGGCTTCCTGGTCAGCCTCCGTTGGGGAATCATCCTCTGAACTCATCTGTGGGTGGCACGGGTTTGTCTTCGGCAGGTAATCAAGCGCCCTCTTCCCTCGGAGGTACTGGCGGGTATAGTTCTGGGCTGGGCGGTCCTTATGGTGGCTACGGTGGGCCTGGTTCGACTGGTTACGGTGCACTGGGGGGTGGCGGCGGGGCAGGTTTGGGTGGAGGTAGTGGCGGGCTGGCCGCTGGTGGAATTGGTGGTGCTGGTGGTGGATTGGGGGCTGCCGGTTCTTTGTACAGATTGCCAACTTCAGTGGGAATGCCAACCGGTGGCTATCAAGATAGTGGACCTTACGGTTTATCTTCCGGGTATCCAAATCAACATCACCAGCCTACTGGAGCCTCCCCTGTACCTAGGGTTCCACCTGGTGCCATGTATCCGAATGTACCTCCTTACTACTGA	1341	0.5541	MDPTKKRKLDDNGVVPPDSDLNLTPSDARKIIERFSPEQLIDVLQEAVARHADVLDAVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSAYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGAGPMGPDGIQGPGNAHGDGMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGSGLPGQPPLGNHPLNSSVGGTGLSSAGNQAPSSLGGTGGYSSGLGGPYGGYGGPGSTGYGALGGGGGAGLGGGSGGLAAGGIGGAGGGLGAAGSLYRLPTSVGMPTGGYQDSGPYGLSSGYPNQHHQPTGASPVPRVPPGAMYPNVPPYY	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4316g00007	446	Gene3D	-	45	152	IPR012677	-
	Pral4316g00007	446	SMART	rrm1_1	70	142	IPR000504	GO:0003723
	Pral4316g00007	446	SMART	rrm1_1	162	234	IPR000504	GO:0003723
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	1	20	-	-
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	306	334	-	-
	Pral4316g00007	446	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	69	146	IPR000504	GO:0003723
	Pral4316g00007	446	Gene3D	-	153	269	IPR012677	-
	Pral4316g00007	446	PANTHER	GEO13361P1-RELATED	52	359	-	-
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	403	446	-	-
	Pral4316g00007	446	FunFam	UBP1-associated protein 2C isoform A	52	155	-	-
	Pral4316g00007	446	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	71	138	IPR000504	GO:0003723
	Pral4316g00007	446	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	163	220	IPR000504	GO:0003723
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	428	446	-	-
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	408	426	-	-
	Pral4316g00007	446	SUPERFAMILY	RNA-binding domain, RBD	155	264	IPR035979	GO:0003676
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	294	334	-	-
	Pral4316g00007	446	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	161	238	IPR000504	GO:0003723
	Pral4316g00007	446	SUPERFAMILY	RNA-binding domain, RBD	61	144	IPR035979	GO:0003676
	Pral4316g00007	446	MobiDBLite	consensus disorder prediction	241	266	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4316g00007	Pral-Chr4316	20290	23994	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4316g00007	157	254	C2H2 Transcription Factor Family	AT2G19380	40.000	3.86e-11	63.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4316g00007	K12741		-	qsa:O6P43_001025	588.571