Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4311g00042 ATGGAGTTTGGGATCTCAATCTCTAAACTTTTATATCTTTTCTTATTTGGATGTTTCGCTTTGAAAGCTTTCACAAACTGTGGATCCGATGCTCAACTCATACTAGAAGATGAAGTGAAAGTTCTAAAAACAATATCATCGAAGATAGAGAACTTGAATTGGGATGTGACCCAACATTCTTGTGTCGATGGAAGCTTCAAAAATGAGACCATTACAGCGGATAGCTTCACAAGGAATGTAATATGCGATTGCAAATTCTCAAATGGAAAAGTTTGTCATGTTACAAAGATCATTGCCACGGGTCTCAACTTATCGGGACTTTTACCAAGTGAATTTGGATTCCTTACCTATCTGCAAGAACTTGATTTGTCTCACAATTATCTAAATGGATCAATCCCAAGGAGCTTTGGTAGACTCCCTCTTGTTACATTACGCCTTACGGCTAACGCAATCAGTGGCTCAATTCCAGACGCTTTTGGTGAAATTACATCTTTAGAGAATTTAGAGTTGAAAGATAATCTATTAGAAGGGACTCTTCCTTCTAGCCTCGGAAAATTGATGCAGCTACGCAAGTTTTATTTAGATGGGACCAATATATCAGGAAAATTATCCAATTTTATTGGGAATTGGACCCAACTCCAAGAAATGTCCCTGGAGGGAACGTCCATGGAAGGCCCCATTCCTACAATCATATCTCACTTAACAAATTTGTCTGAACTGAGAATATCTGATTTGCATGGACCAGCGATAATGAGATTTCCTAATCTGGAGAATTTGACATCCTTGCGGCGCCTGGTGTTGAGAAATTGCTCCATCCATGATTCCATTCCAAATTATATTGGTAAAATGGAAAACTTATATAGAGTAGATTTGAGCTTCAACAAGTTGACCGGTATAATCCCAAACAATATAAGTAACTTGACTGCCCTATATTACATGATTCTAACTGAAAATTCCCTGACCGGAAAATTTCCTGATTGGATATTGCAACAGCAATACAATTATGGTTCTTTTGATTTATCTTACAACAATTTTTCGGAGACCTCTGCGACTAATTGTCAGTACGAAAACTTAAACTTGGTTTCGAGTCTATCATCTTCAGCAAACACATTATGCACTTGCTTGAAAAGGGGGCTTCCTTGTGGAAGAAAACCAAAGTATCATTCATTGTTCATAAACTGTGGTGGACCAGAAATTAAATATGAGGGGAATAAATATGAAGGCGATATCAATTCTCAGGATACCTCATTCTTTTGCCCCGGTGATGATAAATGGGCTTATAGCAGCACAGCAGGAATAACAACATACTATAATCACATAGCAAAAAATAGATTTTCCCTCAACATTACTGGTCCTGACTTTTACCAAACAGCTCGCATTTCCCCTCTGTCTCTCAAGTACCATGGCCTCTGTATGATTAATGGAAATTACAATGTCAAGCTATATTTTGCTGAGATTATGTATTCTCATGACCAAAATTTCAATAACCTTGGAAGGCGCATATTTGATGTTTCAATCCAAGGTAGGAAATATTTGCATGATTTCAACATTATCAGGGAAGCTGGTGGCGTTGGTAAGGGCATTGTCAAGGACTTTAATGTTGATGTTAATGATAACACCTTGGAGATTCATTTGTATTGGGCTCGAAAAGGAACTAGTTCTATTCCTAATGATAATAACAGTGTATATGGACCTCTTATATCTGCTATTTCAGTCACCCCAAATTTCAATATTCCTTGGATTTCTGGGGGAGGCATTGCTGGAATTGTGGTTGGATCGTATGTGTTCCTCATCATACTAATAATAATATTCATCCTCCGACGAATGGGCTTACTAGGTGACAGACGTTCAAAAGACAAACAACTTTTAGATTTAAAAACAGGTTATTTCTCTTTAAAACAAATCAAAGATGCCACTAATAACTTTGCCCTAGAAAATAAGATTGGTGAAGGAGGTTTTGGACCGGTGCACAAGGGTATACTATCAAATGGAGTTGTCATAGCTGTGAAACAGCTTTCCTCTAAATCAAAGCAAGGGAATCGTGAATTTGTTAATGAAATTGGAATGATATCTGCTTTGCAACACCCAAACCTTGTAAAACTTTATGGATGTTGCGTTGAAGAAAACCAATTGCTGCTGATATATGAGTACATGGAGAACAATAGTCTTGCTAGAGCTCTTTTTGGTGGTCAAGGACAAAAGATACATTTGGACTGGCCTACAAGAATGAAGATATGCGTAGGAATAGCAAGAGGATTAGCTTATCTTCATGAGGAATCAAGGCTGAAAATTGTGCACAGGGATATTAAGGCAACAAATGTCTTACTTGATAAAGATTTGAATGCCAAGATCTCAGATTTTGGATTAGCCAAGCTTGATGAAGATGAGAATACTCATATAAGCACAAGAATAGCAGGAACAATTGGTTATATAGCTCCTGAATATGCAATGCGAGGACACTTAACTGAGAAAGCAGATGTTTATAGTTTTGGAGTTGTTGCTTTAGAAATTGTTAGTGGAAAAAGCAACACAAGTTACAGGCCAAAAGAGGAGTTTGTTTATCTTCTTGACTGGGCCTATGTTCTTCAAGAGCAAGGAAACCTTCTTGAGCTAGTGGATCCAAGCCTTGGTTCAAGCTACTCCTTACAGGAAGTCACGAGAATGCTGGAGCTGGCACTCCTATGTACTAACCCATCTCCAACTCTAAGGCCATCCATGTCCTCTGTTGTTGACATGCTTGAAGGAAAGTTGCCAATCCAAACCCTAGCAACCAAACGTCAGGAGAGTGACCAACAAGTTGCCAAATTCAAGGCCTTTGAGATACAATTATCTCAAGAAAGCTATAGCCAAATCTTTAGTTCTTCTTCTATATCAAGATCACACGAAAATGTGAAGTAA 2898 0.3806 MEFGISISKLLYLFLFGCFALKAFTNCGSDAQLILEDEVKVLKTISSKIENLNWDVTQHSCVDGSFKNETITADSFTRNVICDCKFSNGKVCHVTKIIATGLNLSGLLPSEFGFLTYLQELDLSHNYLNGSIPRSFGRLPLVTLRLTANAISGSIPDAFGEITSLENLELKDNLLEGTLPSSLGKLMQLRKFYLDGTNISGKLSNFIGNWTQLQEMSLEGTSMEGPIPTIISHLTNLSELRISDLHGPAIMRFPNLENLTSLRRLVLRNCSIHDSIPNYIGKMENLYRVDLSFNKLTGIIPNNISNLTALYYMILTENSLTGKFPDWILQQQYNYGSFDLSYNNFSETSATNCQYENLNLVSSLSSSANTLCTCLKRGLPCGRKPKYHSLFINCGGPEIKYEGNKYEGDINSQDTSFFCPGDDKWAYSSTAGITTYYNHIAKNRFSLNITGPDFYQTARISPLSLKYHGLCMINGNYNVKLYFAEIMYSHDQNFNNLGRRIFDVSIQGRKYLHDFNIIREAGGVGKGIVKDFNVDVNDNTLEIHLYWARKGTSSIPNDNNSVYGPLISAISVTPNFNIPWISGGGIAGIVVGSYVFLIILIIIFILRRMGLLGDRRSKDKQLLDLKTGYFSLKQIKDATNNFALENKIGEGGFGPVHKGILSNGVVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVEENQLLLIYEYMENNSLARALFGGQGQKIHLDWPTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEDENTHISTRIAGTIGYIAPEYAMRGHLTEKADVYSFGVVALEIVSGKSNTSYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSSYSLQEVTRMLELALLCTNPSPTLRPSMSSVVDMLEGKLPIQTLATKRQESDQQVAKFKAFEIQLSQESYSQIFSSSSISRSHENVK 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4311g00042 965 Gene3D - 388 575 - -
Pral4311g00042 965 SUPERFAMILY Protein kinase-like (PK-like) 626 914 IPR011009 -
Pral4311g00042 965 Gene3D Ribonuclease Inhibitor 34 249 IPR032675 -
Pral4311g00042 965 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 613 717 - -
Pral4311g00042 965 FunFam Leucine-rich repeat receptor protein kinase EMS1 108 205 - -
Pral4311g00042 965 Pfam Protein tyrosine and serine/threonine kinase 644 912 IPR001245 GO:0004672|GO:0006468
Pral4311g00042 965 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Pral4311g00042 965 Pfam Leucine Rich Repeat 118 139 IPR001611 GO:0005515
Pral4311g00042 965 SUPERFAMILY L domain-like 52 372 - -
Pral4311g00042 965 Gene3D Ribonuclease Inhibitor 250 377 IPR032675 -
Pral4311g00042 965 FunFam Putative LRR receptor-like serine/threonine-protein kinase 718 925 - -
Pral4311g00042 965 SMART serkin_6 642 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4311g00042 965 ProSiteProfiles Protein kinase domain profile. 642 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4311g00042 965 Gene3D Transferase(Phosphotransferase) domain 1 718 941 - -
Pral4311g00042 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Pral4311g00042 965 Gene3D Phosphorylase Kinase; domain 1 611 717 - -
Pral4311g00042 965 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 387 575 - -
Pral4311g00042 965 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 950 - -
Pral4311g00042 965 CDD STKc_IRAK 648 915 - -
Pral4311g00042 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Pral4311g00042 965 Pfam Malectin domain 390 570 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4311g00042 Pral-Chr4311 665927 676508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4311g00042 1 963 Receptor kinase-like Gene Family AT1G53440 54.237 0.0 1026
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral4311g00042 PK_Tyr_Ser-Thr 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4311g00042 - - gmx:121173337 1149.42