Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4311g00039 ATGGAGTTTGGGATCCCAATCTCTAAACTTTTATATCTTTTCTTATTTGGATGCTTCGCTTTGAAAGCTTTCACAAACTATGGATCCAATGCTCAACTCATACCAGAAGATGAAGTGAAAGTTCTAAAAACAATATCATCAAAGATAGAGAATTTGAATTGGAATGTGACCCCACATTCTTGTGTCGATGAAGGCTTCAAAAATGAGAACATTAGTACAGCGAATGGCATCATAAGGAATGTAACATGCAATTGCAGTTTCTCAAATGGAAAAGTTTGTCATGTTACAAATATTGTTCTCACGGGTCTCAATTTATCTGGACTTTTACCAAGTGAATTTGGATTCCTTACCTATCTACAACAACTTGATTTGTCTCACAACTATCTAAATGGATCAATCCCAAGGAGCTTTGCTAGACTCCCTCTTGGTACATTGTGCCTTACGGCTAACGCAATCAGTGGTTCAATCCCAGACGCTGTTGGTGAAATTACAACTTTAGAGGACTTAATGTTGAAAGATAATCTATTGGAAGGGACTCTTCCTTCTAGTCTCAGCAAATTAACACAGCTACGCATGTTGGATCTTTCTGGAAATAACTTCTTAGGAGCAATACCCAAAAGTTTTGATAACCTGAAAAAACTAGAATTTATTTATTTAGATGGGACCAATATATCAGGAAAATTACCCAATTTTATAGGGAATTGGACCCAACTCCAAGAAATGTCTCTGGAGGGAACATCTATGGAAGGTCCCATCCCTACAACCATATCTCACTTAACAAATTTGTCTGAACTGAGAATATCTGATTTGCATGGACCAGCCATGATCAGATTTCCTAATCTGGAGAATTTGAAATCCTTACGGCGCCTGGTGTTGAGAAGTTGCTCCATCCATGATTCCATTCCAAATTATATTGGTGAAATGCAATACTTATATAGATTTGATTTGAGCTTCAACAAGTTGACCGGTAAAATCGCAGACAATATAAGTAACTTGACCGCCCTAAATTACATGATTCTAACTGAAAATTCTCTGACTGGAAAAATTCCTGATTGGATATTACAACAGCAATATAATTACGGTTCTCTTGATTTATCTTACAAAAATTTTTCGGAGACTTCTGCGACAAATTGTCAATACGAAAATTTAAACTTGGTTTCGAGTCTATCATCTTCAGTAAACATGTCATGTACTTGCCTGAAAAGGGGCCTTCCTTGTGGAGGAAAACCCAAATATCATTCACTGTTCATAAACTATGGAGGACCAGAAATTAAATATGAGGGGAATAAATATGAAGGCGACATCAATTCTCAGGGTATTTCATTCTTTTGCCCTAGTGATAATAAATGGGCTTATAGCAGCACAGTAGGAATCACAACATACTATAATCACATAGCAAAAAACAGATTTTCCCTCAACATTACCGGTCCTGACTTTTACCAAACAGCTCGCATTTCCCATTTGTCTCTCAAGTACCATGGTCTCTGTATGATTAATGGCAATTACAACGTCAAGCTATATTTTGCTGAGATTATGTATTCTCATGACCAAAATTTCAATAACCTTGGAAGGCGCATATTTGACATTTCAATCCAAGGTAGGAAATATTTGCATGATTTCAACATTATGAGGGAAGCCGGTGGCATCAGTAAGGGCATTGTCAAGGACTTTAATGTTGATGTTAATGATAACACCTTGGAGATTCATTTGTACTGGGCTCGGAAAGGAACTAGCTCTATTCCTAATGATAATAACGGGGTATATGGACCTCTTATATCTGCTATTTCAGTCACCCCAAATTTCAAAATTCCTTGGATTTCTTGGGGAGCCATTACTGGATTTGTGGTTGGATCATGTGTGCTCCTCATCATACTAATAATAACATTTGTCCTCCGAAAAATGGGCCTGCTAGCTGACAGAGATTCAAAAGACAAACAACTTTTTGATCTAAAAACAGGTTATTTCTCTTTAAAACAAATCAAAGATGCCACTAATAACTTTTTCCCAGAAAATAAGATTGGTGAAGGAGGTTTTGGACCAGTGCACAAGGGTACACTATCAAATGGTGTTGTCATTGCTGTGAAACAGCTTTCCTCTAAATCAAAGCAAGGGAATCGTGAATTTGTTAATGAAATTGGAATGATATTTGCTTTGCAACACCCAAACCTTGTAAAGCTTTATGGATGTTGCGTTGAAGAAAACCAATTGCTGCTGATATATGAGTACATGGAGAACAATAGTTTTGCTAGTACTCTTTTTGGTGGCCAAGGACAGAGGATATATTTGGATTGGCCTACAAGAATGAAGATATGCATAGGAATAGCAAGAGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAGTTGTGCACAAGGATATTAAGGCAACAAATGTCTTACTTGATAAAGACCTGAATGCCAAGATCTCAGATTTTGGATTAGCTAAGCTTGATGAAGATGAGAATACTCATATAAGCACAAGAATAGCAGGAACAATTGGTTATATGGCTCCTGAATACGCAATGCGAGGACACTTAACTGAGAAAGCTGATGTTTATAGTTTTGGAGTTGTTGTTTTAGAAATTGTTAGTGGAAAAAGCAACACAAGTTACAAGCCAAAAGAGAAGTTTGTTTATCTTCTTGACTGGGCTTATGTTCTTCAAGATCAAGGTAACCTTCTTGTGCTAGTGGATTCAAGTCTTGGTTCAAGCTACTCCTTACAGGAAGCCATGAGAATGCTGGAGCTGGCACTTCTATGTACTAACCCATCTCTAACTCTGAGGCCATCCATGTCCTCTGTTGTTTGCATGCTTGAAGGAAAGTTGCCAATCCAAGCCCTAGCAATCAAACGAAAGGAGATGAGTGACCAACAAGTTGCCAGATTCAAGGCCTTTGAGATACTATCATCTCAAGAAAGCTATAGCCAAACCTATATAGCTTCTGCATTCTCACATGAAAGTGTGAAGAAAAGATTTGAAGTAATGGATGGCTCAATGGTTTGA 3003 0.3753 MEFGIPISKLLYLFLFGCFALKAFTNYGSNAQLIPEDEVKVLKTISSKIENLNWNVTPHSCVDEGFKNENISTANGIIRNVTCNCSFSNGKVCHVTNIVLTGLNLSGLLPSEFGFLTYLQQLDLSHNYLNGSIPRSFARLPLGTLCLTANAISGSIPDAVGEITTLEDLMLKDNLLEGTLPSSLSKLTQLRMLDLSGNNFLGAIPKSFDNLKKLEFIYLDGTNISGKLPNFIGNWTQLQEMSLEGTSMEGPIPTTISHLTNLSELRISDLHGPAMIRFPNLENLKSLRRLVLRSCSIHDSIPNYIGEMQYLYRFDLSFNKLTGKIADNISNLTALNYMILTENSLTGKIPDWILQQQYNYGSLDLSYKNFSETSATNCQYENLNLVSSLSSSVNMSCTCLKRGLPCGGKPKYHSLFINYGGPEIKYEGNKYEGDINSQGISFFCPSDNKWAYSSTVGITTYYNHIAKNRFSLNITGPDFYQTARISHLSLKYHGLCMINGNYNVKLYFAEIMYSHDQNFNNLGRRIFDISIQGRKYLHDFNIMREAGGISKGIVKDFNVDVNDNTLEIHLYWARKGTSSIPNDNNGVYGPLISAISVTPNFKIPWISWGAITGFVVGSCVLLIILIITFVLRKMGLLADRDSKDKQLFDLKTGYFSLKQIKDATNNFFPENKIGEGGFGPVHKGTLSNGVVIAVKQLSSKSKQGNREFVNEIGMIFALQHPNLVKLYGCCVEENQLLLIYEYMENNSFASTLFGGQGQRIYLDWPTRMKICIGIARGLAYLHEESRLKVVHKDIKATNVLLDKDLNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYAMRGHLTEKADVYSFGVVVLEIVSGKSNTSYKPKEKFVYLLDWAYVLQDQGNLLVLVDSSLGSSYSLQEAMRMLELALLCTNPSLTLRPSMSSVVCMLEGKLPIQALAIKRKEMSDQQVARFKAFEILSSQESYSQTYIASAFSHESVKKRFEVMDGSMV 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4311g00039 1000 CDD STKc_IRAK 673 940 - -
Pral4311g00039 1000 Pfam Malectin domain 415 595 IPR021720 -
Pral4311g00039 1000 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 971 - -
Pral4311g00039 1000 Gene3D - 413 600 - -
Pral4311g00039 1000 FunFam Putative LRR receptor-like serine/threonine-protein kinase 743 950 - -
Pral4311g00039 1000 Pfam Protein tyrosine and serine/threonine kinase 671 887 IPR001245 GO:0004672|GO:0006468
Pral4311g00039 1000 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 412 600 - -
Pral4311g00039 1000 SMART serkin_6 667 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4311g00039 1000 SUPERFAMILY Protein kinase-like (PK-like) 650 939 IPR011009 -
Pral4311g00039 1000 Gene3D Ribonuclease Inhibitor 43 203 IPR032675 -
Pral4311g00039 1000 Gene3D Ribonuclease Inhibitor 274 401 IPR032675 -
Pral4311g00039 1000 Gene3D Phosphorylase Kinase; domain 1 632 742 - -
Pral4311g00039 1000 Gene3D Ribonuclease Inhibitor 204 273 IPR032675 -
Pral4311g00039 1000 ProSiteProfiles Protein kinase domain profile. 667 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4311g00039 1000 Gene3D Transferase(Phosphotransferase) domain 1 743 963 - -
Pral4311g00039 1000 FunFam Leucine-rich repeat receptor protein kinase EMS1 134 230 - -
Pral4311g00039 1000 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Pral4311g00039 1000 Pfam Leucine Rich Repeat 119 139 IPR001611 GO:0005515
Pral4311g00039 1000 SUPERFAMILY L domain-like 87 370 - -
Pral4311g00039 1000 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 637 742 - -
Pral4311g00039 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Pral4311g00039 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 278 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4311g00039 Pral-Chr4311 594154 613303 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4311g00039 1 1000 Receptor kinase-like Gene Family AT1G53440 54.492 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral4311g00039 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4311g00039 - - gmx:121173337 1206.43