Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4311g00011 ATGGCTCGTTCTATCTGCGAAGCTATCTGCGCAATCTCTCCTTCAACATTTCAATATCTGATTTGTGCTCAGACCCGATGGTTTTCTGTGAGGTACGCTTCTTCAACTTCGTCCAATGGGCATTCTTTCACCGTCTCGTATCTCATTGACACCTGTGGCTTCTCACCTACACAAGCTGATTCAACTTCTAAGCATGTCAGCTTAGAAACGCGGGATAAGCCTGATTTGGTTATCAATTTTCTTAAAAGTCATGGATTCTCTCGGCCCCAGATTATTCGTTTCATTACAGATGTCCCATCGTTTCTTCGATATGATCCTGAGAAAACCTTTCTGCCCAAGATTGAATTTTTCAAATCCAGAGGCGTTTTGAGCTCAAACATCCCTAGGATCATATGTAGTTGTCCTAGAATCATGGCAAGAAGCTTAAGGAAGCAGCTCATTCCTTCCTTTGACTTACTTCGAGATGTGTTTCGATCTGACGAGAAGCTCATTAAAACTCTTCAAAAGTACTCGGGCATTCTTATTGACAGCAACACACTTGCCCGGCCTAATATGGAGCTATTGCTAGAAGCAGGAGTTCCTCAATCAAATGTTATCAAATGTGTGCAGGATTTTCCTAGGATTTTTACTAGAAGACCTAACGAATTCAAGGACATTGTGGAAGAAGTTAAGGAAATTGGGTTTGATCATTTGAAGTATAATTTTCTTGTTGCTGTTTTTGTATACTTAGCGTTAGGAAAATCCTTATTCGCCAAAAAGGCTGATGTTTATAAGAAGTGGGGTTGGTCCGACAATGACATTCTCGTGGCATTTAGAAAGTACCCCTTGTGTATGATCACGTCTGAGAATAAGATTGATGCAGTAATGGAGTTTCTTGTCCATAAAATGGGCTGTGAGTCATCAACTATTAGCGAATATCCTTCAGTTTTTGGATTAAGTGTGAAAAGGCGATTGATACCAAGAGGTGCTGTCATTCAAGCTCTGCTGTCAAAGGGTCTGATGGAAAGGGAAACATTGTTTGCAACATTTATATACACTGAAAACTACTTTTTGGGGAAGTTTGTCCATTGTCATGTACAGGAAGCTACTGAATTGTTAGAGTTGTATCAGGCCAAACTGGATCTTGCGGAGTGA 1134 0.4056 MARSICEAICAISPSTFQYLICAQTRWFSVRYASSTSSNGHSFTVSYLIDTCGFSPTQADSTSKHVSLETRDKPDLVINFLKSHGFSRPQIIRFITDVPSFLRYDPEKTFLPKIEFFKSRGVLSSNIPRIICSCPRIMARSLRKQLIPSFDLLRDVFRSDEKLIKTLQKYSGILIDSNTLARPNMELLLEAGVPQSNVIKCVQDFPRIFTRRPNEFKDIVEEVKEIGFDHLKYNFLVAVFVYLALGKSLFAKKADVYKKWGWSDNDILVAFRKYPLCMITSENKIDAVMEFLVHKMGCESSTISEYPSVFGLSVKRRLIPRGAVIQALLSKGLMERETLFATFIYTENYFLGKFVHCHVQEATELLELYQAKLDLAE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4311g00011 377 SMART mt_12 164 194 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 SMART mt_12 128 160 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 Pfam mTERF 78 230 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 Pfam mTERF 247 350 IPR003690 GO:0003690|GO:0006355
Pral4311g00011 377 FunFam Mitochondrial transcription termination factor-like 142 362 - -
Pral4311g00011 377 Coils Coil 359 377 - -
Pral4311g00011 377 Gene3D Transcription termination factor 3, mitochondrial 141 367 IPR038538 -
Pral4311g00011 377 PANTHER CGI-12 PROTEIN-RELATED 39 358 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4311g00011 Pral-Chr4311 73773 75650 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pral4311g00011 mTERF 8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4311g00011 K15031 - qsa:O6P43_003532 343.584